RNA id: XM_021613490.2


Basic Information

Item Value
RNA id XM_021613490.2
length 5228
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110530432
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69263522 ~ 69354693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATCATATGCTCACTTGCGGATTAGTTTTGCAGACGAGGATGGGTATTGAGGGAGAGACAGGCACAGCAATTCACTCACTCTATTTCACTATCAGTCATTATTTTGGGACAAGCTGTAAAGTAGCCTATAGCAGCAATGGTCTACATCATAGTATAATAATATCCGTGGTTTTGAATTCTGCCCTTGGCATTCCGGAGGCAGCCCGGTGTGAGTGAGCGAGATCGGAATCCAGGTCCAGGTTTGGAATATACAATATTATATCTGTCGTCGTTGATAGAAGAGACGAAGGGGTTTAAGGAAGCGCTCAAGATCGAAAGCGTTGCGATTGGTTGAGGTCAGGTAGGAATCGGGGAGCCGTTCGTTTAGGGAGCCGTTCGTTTAAAACCCCGTCCCGGTATGCCTTGCATTTAGACGCAAATTAATTTTCGTCTATCCATGTTCAAATCGGGCAACTACCCCATGGCGGCGGATACTGCGCCCACCACCATGCATGGGAGTTGGTTCAACAACACGGGCTACATGGAAAACAATATGCCCGTGGCGGTGGAGAAACCGAAGAAGGCATTTTACCTGGTCAGAATGATGTCTCTCAACAACAATAAGAAAGGGCAACAAACCAAGCATCAGCAAACCAACCACCAGCATCACCAGAATAACAATATGCCCTTCATGATACACTGTCACATCGGAAAAGAGATCAAACACATTTGCAGCAACTGCAGTCGCGGGAACGAAACCCAGGACGCAGAGGAGGTTGAAAGGCGGTCCGCAATGCGTTCCGAGTCTCTGGTCTCTGGCACACACACCCCGCCCATCCGCCGCCGGAGCAAGTTTGCCACTCTGGGCCGTCTCTTGAAGCCCTGGaagtggaggaagaagaagagtgaGAAGTTCAAGCAGACCTCTACCGCGTTGGAGAGGAAGATGTCGGTAAGGCAAAGCAGAGAAGAGCTGATCAAGAGAGGTGTGCTGAAAGAGATCTTTGAGAAAGCAACCGTGGAGTTTCGATCCTCGATGGAGGGTGGAGTCTGCACTCGTGAGCCCTCTAGTATGAAGTCGTCCATGGTCCTGCCTTCCAAGAAATCTGTTGGTTTCCCCAACAACGTTCAGGACAATGTCGCCAAGACCCCCATGTACCACAAACAGCCCCCTGCGCTGCCCCCCAAACCTTTCAACAGGATCCCCAACCACAGCACAGactCTTGTCAGCAGATGAAGCTGCCTTGTATGCCAGGCCAGGGAGGCAagctatctcctcctctacctcccaagAAATTGATGATCTGTGTGCCTCAAGGGGGAATGGACAACTCTtgctcctcaccctctcccctcgGCACCTTCTCCCAGCCGAAGTTCCCCCCTCCACATGGCCACCTCCAAGGCCATCCCCCCCACCATGGCCCTCTGCTGCCCTCGCATCTCACATCCCTAGCCAACCTCCACCAGGGGCTCCAGGGGGGCGGGAAGCACCATAACCACGGACACGCACACAACCAAGGCCACCAGCTCCATCTGCAGTATGGCTCCATGCAAGGCCATGCCCCCAGCCGCATCATCGAGGAGCTCAACAAGACGCTGGCCTTCAACCTGCAGAGGCTGGAGAACAATGCAATGCATTCTGGTCAGTGTAGTCTTCTGGACAGAAGCCAGGTGCCCTCTGAGATCATCGACGAGGACGACAAAGAGAACATGCCCAACGAGTCTGACTATGAGGACCTGCCCAGCATGTACAaaaatgaggatgatgatgatgaggatgatgaagatgatgatgaggatgatgactCGCTCTTTACAAGTACCCTGGGTCTGAAAGTGTTGAGGAAGGATTCTCTGGCTGTCAAGCTGAGTAACCGTCCATCTAAGAGCGAGCTGGAGGAGAAGAACATCCTGCCCATGCAGACTGATGAGGAGAGGCTGGAGTCCAGGCAGCAGATAGGCACCAAGCTCACACGGCAGTTGAGTCAGAGGCCCAGTGCTGAGGAACTGGAACAGAGGAATATCCTGAAACCGCTCAACGAAcaggaggagttggaggagaagagggaaataAAACGCAGATTAACGCGAAAGCTGAGCCAGAGGCCTACGGTGGAGGAGCTGAGACAGGCTAAGATCCTGATCCGCTTCAGTGACTACGTAGAGGTGTCCGATGCCCCGGAACACGACAGACGGGCAGACAAACCCTGGACCCGCCTCACGGCAGCCGACAAGGCAGCCATACGGAAGGAACTCAACGATTTCAAGAGCCATGAAATGGAAGTGCACGAGTCAAGTCGCCATTTAACCAGGTTTCACAGGCCGTAGACCATCACTGTCTATAGGAACGCCAGACAGACTGGCTGTTTTCCTTCACTGAGAACCATAAGTGCTGGACAGTAAATGGTGCCCATTTCTACAATAAGGCCATGTCTTCTTCTGATTTGAAATGCCTTTTCAATACCCTGCTACTCAGTCGGTCGGTACCTTCCCCTCCAGAGACAAAACAGTAGTTGAACACCTTTAGTAGCCCCTCCAACTCCCACAATTTTCTCAATGTAACTGACTGACGAGTTCGTCCCATACCTTAGTGCTGAGCTCTCAGGAAGGCGCTCAGTGCTTTGGGGATGATGATAGTGGGATGGGCTGGTTGGGATTGGACACCTGCCATCTCTACTCCACTGACTGGCTGTCATGGTTACCAGGTACCTATGCCCCGCCCTTGTCACTGTCTCATCATTGGCTTGTCACTATTGGTGGAAGGAGCCTCCACATCCTCACTCAATCAGAAAGGACATTTTTTCTCCCTCTACCCATGGACGTTGCAAGAGATGGACTTCAACCACTTGGAGAATGTTATCCTTGGTCTGTTAAGATGAACCTAGTGCTGTTTGTGGATTCATCTACAGTGTTTAATTGGTTAAAGAGAAAAAGAAATGAGGGGTCTGGTCCATAAAACATTTCAGAATTATGTGCAATAttttccctctgctctctccttagGTCATAGCGCCCTCTGGGGTTCACCCTGTCATGACCATGCAATCCCACCTCTACTTCTCCCCATGGTGGTCAGTTCAGTTCCCACTGTACCCACAATGTTGATCTATTGCTAACTGTGAATTTGAAAGTGCAGACAATGTTTTGTTTACACTCTCCAAATATACATTGTGTTTATACAGAGGTATGAAGTAACATTTTAAATAGAATCACGCTTCAATACTGTTCTTTTCATGTCGGGATCCTGAAAGGATGAAAGGGTAACCTTAATGAAAAATGTAGCTGGCAGATAATGCACTGACTGTATGTGTTAAGGTTGAACAGCTTTTtacatcatttttatttttaaaagtgACACTTTGATTTTAAACTGTGGGTTATGTGGCTTTAGGGCATGTCACAGGTCTCTGATGTTTGAATATAGACTCCTTCAGAGAAGAGCTATTTTGTGTCCCAAATCTCATCCTGTtttctatatagtacactacttttgaccagagacacatatgggccctggtcaaaagtagtgtactaaatagggaatagggttccatttaggatgTACATGTGGCTCGCCATCCAGGGATACTTTATGCGTTTTACTGTTGACAATTAAGCTTTTCTCATTTTGCAGTCTTATGTTTAATGAACTCTGCTGACGTGAGTGCACTGCACTCTATTTTTCAGTCTTTTCTGTATAATTAAGAACAAGTTATATTCTTTCTGCTGCTTGGCAAACTGTATGAAAACCTTTTTAGTTTGCTTGTAAACGGTCCTCtccattttttttgtgtttttttgttgccaTTTTAGGAAAGGCCCCAATGGGAATATCGGGATTGAAATCCTATTGGCCACTGTTTTGAGTTGTTTTAAAATGCTACGTATTACTCTTATAGTTGCAATATGAAAATGTTTGCTTGTCATAAGACGTAGATTAGATCTGGTGAAGGGTCTGATTGGCCACCTAAGGTATTAATGTATTTGCATAGGAAAATGCACCAACAAAAAGACATCCTCTGTCATTTTTAACGTCTTTGTAGTTGAGGCCCAATGAAATTTACAAAAACATTAAGGAACATCGAAGGTATTGCACATATATTTGGTTATCAGGTAAACATGGGTCCTTATTATATAAAATGTTAGTTTATTCTCCACATATTACTTAATGCTTAATTTATTACACAGGTTATTCTCTTTCCCAATGTCCCTGTTTTGTTTTTCCTAATTTCATTGGAACAACTTAAATCAGTAGATTCTTCAAGAGATGATGGGGTCATGTTTTCTGCTTGAATCAGCATCCTTGTTGATTCCAGCATCATGCCAACCACGTCATCATGTTTGCCTCAAACCGTTTTGGGCATTGTTTTGAATCCTAACGCTTTGATCAACATCTTGAGGGGGCTCCTCTCTCTTTTGACAGACCACTTAACCACAGAGCATATAGTATGAGGATGGTGTCATGTTGGAATTGAGGAATATGAATTCAGTCATAAACTTTTGTTACATGTACTTGTTGAGAATTTAATTTGAAagtgatttgatttattttggaAATAGGAATTCCTTTCCATTTACAATGTGAATGACCcccttgtctgtctctctattaAACGTCGTTATGCATTTTGCATTCTGTTCACTATCATTTAAGACACGTTTTCTCAAACCATGGCAATATTGACATCCGCTATTGGGTCTTTATGGCTGCCCAGGAATTGTAGCTAATGTGATTTAGAGTAAAATACTGCCTTACTACtttggctttgtgtgtgtgtgtgtgtgagagagagttatGCTTTTGGATCTTTATGTTGACCACCACAACCTCATCGGTCTATCATAAAGAGGTTATCCCACAGAGCTCCAATGAATCACCATGTAATTCTATGGGTTATTCCTTTTGCTTTATGAGTTCAGGGAAGCTCACTCTCTCATCCCAAATAGTCTGGATGTACCACTTGTTGGTGTTTTGGGGTTTCATAGATCCAATAACTGTTCCAAGCACGTCAAAATATTTTCATCCAACTAAAAAGTCCATTTTGACAATTTATTACATTTGTAAAGCACTTTTCATTATACAGAATAATCGAAGTAGTAATGTATAGTAAAACCTATGTACAGGATTCTCCAATGGCCTACCCTATGTCAGATCTTCACTTTGCACAGGTAGACAATGCATGCAACGGGTAGACTGATTTGTTTATGTCCAAGAAATCTTATTAAAAGGATTTTCCCAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU840044 lncRNA upstream 102269 69181513 ~ 69192634 (+) True G739821
TU840042 lncRNA upstream 112457 69182116 ~ 69182446 (+) True G739819
TU840025 lncRNA upstream 147682 69145635 ~ 69147221 (+) True G739802
TU839967 lncRNA upstream 175782 69117563 ~ 69119121 (+) True G739748
TU839960 lncRNA upstream 249031 69045602 ~ 69045872 (+) True G739746
TU840163 lncRNA downstream 20431 69375124 ~ 69375357 (+) True G739932
TU840164 lncRNA downstream 20858 69375551 ~ 69375818 (+) True G739933
TU840165 lncRNA downstream 21239 69375932 ~ 69376131 (+) True G739934
TU840171 lncRNA downstream 37605 69392298 ~ 69392513 (+) True G739940
TU840173 lncRNA downstream 51599 69406292 ~ 69406530 (+) True G739942
XM_036986061.1 mRNA upstream 146227 69135571 ~ 69148676 (+) True LOC110530431
XM_036986060.1 mRNA upstream 177908 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA upstream 177908 69048709 ~ 69116995 (+) True LOC110530428
XM_021613485.2 mRNA upstream 249307 69019200 ~ 69045596 (+) False LOC110530427
XM_021613493.2 mRNA downstream 1157 69355850 ~ 69434566 (+) True LOC110530434
XM_021613496.2 mRNA downstream 152962 69507655 ~ 69520370 (+) False opn7a
XM_021613498.2 mRNA downstream 154612 69509305 ~ 69520370 (+) False opn7a
XM_036986067.1 mRNA downstream 154612 69509305 ~ 69520370 (+) False opn7a
XM_036986066.1 mRNA downstream 155403 69510096 ~ 69520370 (+) True opn7a
TU839922 other upstream 289787 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 387938 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 436150 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1372281 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1747294 67546129 ~ 67547609 (+) True G738244
TU841127 other downstream 181707 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1271528 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2340909 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2349950 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2349950 71704643 ~ 71715616 (+) False G742860

Expression Profile