RNA id: XM_021613496.2


Basic Information

Item Value
RNA id XM_021613496.2
length 1689
RNA type mRNA
GC content 0.53
exon number 6
gene id opn7a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69507655 ~ 69520370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTgagggcgggaggtcctgtatgAACACTTTTACTTCCCAACAGCTCTGCGCTGGGAAGCGCAAGAAGTAAGAATGCCCGACTTGTACAGAAGCCATATCACTGTAAATGCCCCACGGTCAATGCAGACGTCAGATTGACCATGTGGCACCTTTAAAACAGATGGGCGTGTTAGCGAGCATTGACGACATTGCATTTCATTCAAACATACCCGTGGCAGCAGATATAACAGTAGCCATAGTGTATGCAGTGTTTGGCATGTGCTCTCTGTTTAGCAACAGCACACTGCTATACATCTCCTACAAAAAGAAGCACCTGCTCAAACCTGCTGAGTTCTTCATAATCAACCTGGCCATCAGCGACATGAGTCTAACCCTGTCCCTCTACCCCATGGCCATCACCTCCAGCATCTACCATAGgtGGCTGTTTGGGAAAACAGTGTGTTTGATCTACGCGTTCTGCGGCATGTTGTTTGGAGTCTGCAGTCTGACAACTCTCACCCTGTTGAGCATGGTGTGTTTTGTGAAAGTATGTTATCCTCTCTACGGTAACCGGTTCAACGCCGTCCACGGCCGTCTACTGATAGCCTGTGCTTGGGCTTGGGCCCTGGTGTTCGCCTGCTCCCCTCTGGCCCACTGGGGTGAGTATGGTCCGGAGCCCTACGGCACAGCCTGCTGCATCGACTGGCGCCTGTCCAACCTGCATCCCGTGGCCCGCTCCTACACGGCGGCGCTCTTTGTCTTGTGCTACATCGTGCCCTGCTGTGTCATCGTGGCGTCCTACACGGGCATCCTGATGACGGTCCGAGCCTCCCATAAGGCCATGGAGCATCACGAGGCCCGGCAGACCAAGATGAGCAACATCCAGGATGTTATTGTGAAGCTGAGTGTCGCTGTCTGTATCGGTTTCTTCGCAGCGTGGAGCCCTTATGCTGTGGTGTCGATGTGGGCAGCGTTCGGACACATGGATAACATCCCACCTTTGGCGTTCGCCGTGCCTGCCATGTTTGCTAAGTCCTCCACCATCTACAACCCCATTATCTACCTGCTGCTCAGGCCTAACTTCCGCAGGGTGATGTACCGAGACCTGGTGAGCCTTTGCAGGGCCTTTCTGAAGGGCTGCCTGTGCTCCTGCTCCCAGGGCGCTGTGGGGAAGTGCCACTCCCACTTGGTGGTCCGGGTCAGCCTCCAATCGTTCTGTAGACGTCTGGGCCACGGCCAGTCTTGTTCCCCCACCTCATCCGCCCGCCAAGCCCTGGGCGAGTCCAGAGGTTGCACTAGCCCCGGCGAGAAGTGCAGCGATGCCTTCGAGTGCTTCAGACACTACCCAAGAGGTTGCCATGGCGGTACCAACATCCCCAGCTCCTCAGCCAAAGTTTACGCACCTCAGGATCAGCTCTCAACAGAGCCCCAGCTGCAGTCGATGACTCAAAAACAGATGCGGAAGCAGGAAGCGTGTCATAAGAAGTCCCTGCGAGCCACCAAGCACAGCAAAAGGACCTCAGAAATCGACAACCTTCGGATCAACTTTGAGATGGTGCCGGGACACGCTAAAGTGGCCTGGCCCTAAAATGTTAAATATTCATTCTGGttttatagttttttttacatCTCTGGTCTATATTTGGCAGTTGATATATAAATAAATTCCATAATTTAAAACATGTTTATCTGTCAAGATAGACATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841088 lncRNA upstream 1693 69505749 ~ 69505962 (+) True G740790
TU841087 lncRNA upstream 2112 69505257 ~ 69505543 (+) True G740789
TU841081 lncRNA upstream 5325 69502115 ~ 69502330 (+) True G740783
TU841077 lncRNA upstream 8463 69498970 ~ 69499192 (+) True G740779
TU840188 lncRNA upstream 32214 69443367 ~ 69475441 (+) True G739957
TU841141 lncRNA downstream 31082 69551452 ~ 69553671 (+) True G740839
TU841143 lncRNA downstream 33415 69553785 ~ 69554031 (+) True G740840
TU841421 lncRNA downstream 218753 69739123 ~ 69739334 (+) True G741094
TU841431 lncRNA downstream 224720 69745090 ~ 69745594 (+) True G741104
TU841436 lncRNA downstream 243713 69764083 ~ 69764429 (+) True G741109
XM_021613493.2 mRNA upstream 73089 69355850 ~ 69434566 (+) True LOC110530434
XM_036986064.1 mRNA upstream 152962 69294838 ~ 69354693 (+) False LOC110530432
XM_021613500.2 mRNA downstream 42616 69562986 ~ 69576816 (+) False dusp22b
XM_021613501.2 mRNA downstream 42741 69563111 ~ 69576816 (+) True dusp22b
XM_021613503.2 mRNA downstream 58624 69578994 ~ 69591039 (+) False LOC100499175
XM_021613502.2 mRNA downstream 58625 69578995 ~ 69591039 (+) True LOC100499175
XM_021613504.2 mRNA downstream 171919 69692289 ~ 69693962 (+) True LOC110530440
TU839922 other upstream 502539 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 600690 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 648902 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1585033 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1960046 67546129 ~ 67547609 (+) True G738244
TU841127 other downstream 16030 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1105851 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2175232 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2184273 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2184273 71704643 ~ 71715616 (+) False G742860

Expression Profile