RNA id: XM_021613503.2


Basic Information

Item Value
RNA id XM_021613503.2
length 2829
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC100499175
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69578994 ~ 69591039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAAGAAATGTAGCGCATAGTGCTGCACGCATAAAGTGAATAGGCTCCTCCTAGTCAAGACACCGCCATAAAGATGTGACAATATTTAAGAATAGGTCATCCCATGCTCTCTCTTGAGAACAGTGTCGGTGAGATCGATTTCATTACTTTTCAGAGACGCTCACATGGTTAGAGAGATGAACTTCGAGGGGGACAGCGGCCTGTCAGTGAGCTGCGGCAACGGGAAACTTAGACAGTGGCTGATCGATCAGATTGACAGCAGCATCTATCCCGGACTGGTTTGGGAGAATGAAGAGAAAAGCATTTTCAGGATTCCGTGGAAACATGCGGGCAAACAGGATTACAATCGTGACGAGGATGCTGCACTCTTCAAGGCCTGGGCATTGTTCAAAGGGAAACATAGGGAAGGAGTGGACAAACCAGACCCCCCCACATGGAAGACCAGACTGCGATGTGCTCTGAACAAAAGCAATGACTTTGATGAGCTGGTGGAGCGAAGCCAACTGGACATATCCGATCCTTTCAAAGTCTACAGAATCATACCGGAGGGAGCTAAGAGAGGGATCAAGATGGCAGAGACAACGTCCCACATGAGCTCAGTCAACAGCTACCCTATGCActctctatacccatctctacAGAGCCAGGTGTCTGGCGGATTCATGATTCCtcaggagaggaaggagtggaggGATTACAGCCACGCACTGGACCAGCCTCAGCTTCACCAGCCACCCCACACAGAGCTGCAGTACAGCCAGTGCCACTACCCACAGCCACTCAGCCGACCCTGGCACACCGGGCCACACACAGATAACGaCTTCCGACTGCACGTATCCCTGTTCTACCGTGAGTCTCTGGTCAAGAAGGTAACCACCTCGAGTCCTGAAGGCTGCCGGAtcacctcttcttcctcctcatcttcctctccgTCCTCCCTCTGCCACGAGGACAGGCTGTATAGTGGTGCAGAGACGGTGCAATTCCCCTCCCCTTACCCCCAGTCTcagaggagaggggcagagaagCTAACCAACGTCCTGGAGAGGGGCGTGCTCCTGTGGATGACGTTAGATGGGCTCTATGCCAAGCGGCTGTGCCAGAGCCGAGTGTACTGGGAAGGCCCACTGGCACCCTACACGGACAAACCCAATAAATTGGAGAAAGAACAGACCTGCAAGCTGTTTGACACCCAGCAGTTCCTCACTGAGCTGCAGGGGTATGCCCACCATGGCCGTCCCATGCCcaggcaccaggtggtgctgtgTTTCGGAGACGAGTACCCGGACCCCCAGCGCCAGGCCAAGATGATCACAgcacagGTGGAGCCCATGTTTGCCAGGGGCATGATATACTTCAGCCAGCAGAGCAGCAGTCACTGCCTGAGGGACTATGAGCTACAGGGACACACAGAGATCTCCCTTCCGGCTCCAGGAGTCTACCAGAGGACCCTTCAACAGAACTCCCCTCTAGCTCCAGGAGACTACCAGAGGACCCTTCAACAGAGCTCCCCTTTAGCTCCAGGAGACTACCAGAGGACCCTGCAACAAATGCAGGAGTAACACACAAACAGGCCCCAGGAGCCATGGACATGAATGTAGATTGACCAATGAGCTTTACATCGCTTCTCCTGAGTAGTGTACAGTATACTGAGGTCTTGGACTAAAATACCTTACTGTAATTTCAACGTAAGACTGGACTGTGCCTCCATCGTGAGTGTCAGCAGTTTGAGCCAATGATCAATGTTAAAAATGGGGGCGCTTAAAGAATCTACCCTAGTTTGTACAGCCTTACAATTATTTTTGTAATCAaccatttttttgttgttctaTTAAATGATATGAAAAAGTGAATACCTATCACAAGAGGTGGCGTGTAGGCCTATCACGAGGTGATGTGTGTTACTCGTATTCCTGTGACATCTGTGGGTGCTGATGGGAAAGCTCCTGACCTGTGATAGTGGTGTGGGAGGGAGAACCCCACTACTTagcctctctcgttctcctctctctcattttctttcAACGAGAGGGATCGGAtgcatgtgtatttgtgtgcatGTGACATGGTGACAGTGTATAGGATGTGGTTTGGGGTAGAGGGTTTAGGGTGGGTGATGGGGGACCAATGTGAAGCAGAGAGGGACTGTCAGAAGCAGGAAGCACAAGTCACAGGTGCACAGGAAGAAGAGTAGCCCTTATGAGAAATTAAGACTTGAGAAGGAAGAAGAAGCCAAATGTATACGAATGAAGAATACAAATGGATCATTGATATATTGAAGTGTCTCACACAGAGACAATTTCTGTGTAGTATATTTTCACCCAATTATCAAACAATCTATGAAAGGGGTTCACTCCACTTAAGGCCAGGCACTGAATACAAATCCCTTGACATATTTTGATTATTTATGAACAACAATAGGTAACTTTGATGCAACCTAACTGAATAACGATTATTGTATTCTTCTATTTTCTTGATTATCCGGCTCCATAATCTTCCAATCATATATTTCTATTGTCTACTACTTCACCATCTCACAACTGATTGAAAATAGGCAACCctggtgtacagtgcattcggaaagtagtcagaccccttttctttttccacattttgtaacgttacagccttattctgaaatgttttcaattattatttatttcttatgaatctacacacaatacaaaacagaccctttgctatgacacttgaAATTGGCGAATTGTCTacagtcccacagttgatagtgcatgtcagagtaaaaaccaagccatgaggtcgaaggaattgtcctcaGAGCTCagagaggattgtgtcgaggcacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841143 lncRNA upstream 24963 69553785 ~ 69554031 (+) True G740840
TU841141 lncRNA upstream 25323 69551452 ~ 69553671 (+) True G740839
TU841088 lncRNA upstream 73032 69505749 ~ 69505962 (+) True G740790
TU841087 lncRNA upstream 73451 69505257 ~ 69505543 (+) True G740789
TU841081 lncRNA upstream 76664 69502115 ~ 69502330 (+) True G740783
TU841421 lncRNA downstream 148084 69739123 ~ 69739334 (+) True G741094
TU841431 lncRNA downstream 154051 69745090 ~ 69745594 (+) True G741104
TU841436 lncRNA downstream 173044 69764083 ~ 69764429 (+) True G741109
TU841445 lncRNA downstream 183948 69774987 ~ 69775199 (+) True G741118
TU841446 lncRNA downstream 184243 69775282 ~ 69775497 (+) True G741119
XM_021613500.2 mRNA upstream 2178 69562986 ~ 69576816 (+) False dusp22b
XM_021613501.2 mRNA upstream 2178 69563111 ~ 69576816 (+) True dusp22b
XM_021613496.2 mRNA upstream 58624 69507655 ~ 69520370 (+) False opn7a
XM_021613498.2 mRNA upstream 58624 69509305 ~ 69520370 (+) False opn7a
XM_036986067.1 mRNA upstream 58624 69509305 ~ 69520370 (+) False opn7a
XM_021613504.2 mRNA downstream 101250 69692289 ~ 69693962 (+) True LOC110530440
XM_021613505.2 mRNA downstream 108594 69699633 ~ 69703318 (+) True foxf2a
XM_021613507.2 mRNA downstream 134288 69725327 ~ 69727474 (+) True LOC110530442
XM_021613514.2 mRNA downstream 512126 70103165 ~ 70127450 (+) True wrnip1
XM_021613516.2 mRNA downstream 544416 70135455 ~ 70148930 (+) False dhx30
TU841127 other upstream 40718 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 573878 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 672029 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 720241 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1656372 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 1035182 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2104563 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2113604 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2113604 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 2122689 71713728 ~ 71715616 (+) True G742860

Expression Profile