RNA id: XM_021613505.2


Basic Information

Item Value
RNA id XM_021613505.2
length 2532
RNA type mRNA
GC content 0.47
exon number 2
gene id foxf2a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69699633 ~ 69703318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCATCGTTTGGCTGTTGCAGTGTTGACTGCAGTGTCTAAATAAGTTTGATAAATGGTGTAATTGCGTGTATTAGAGTTGTGAGGAGCGGGTGGGAGGAGGTCTCTGTTAGTCCTCTGCTCTGCGCTGTGTTATGTGTGGCTCTTGCTAGAATTATGTCTGGACGGAGGCCAGATCTGGCAGGGGTTGGATCTGGAGATCCTAGCGATTTCTTAGAGGGATTTAGCCGGGATCTATAGGgcagagagagattgaagaaTTGATAGGTGGTCGAGTTTTGTTTGGCCGAGTGGGATATGCGCAGGAAAGTCGAAGAGCTTTATGTTTCCCCTCATAAAGGGTTATTTCCAGAGATGGCCACAGTGAGACGGAGTTGGAGCAGCGGCCACACCGATATACAGCTGTTTTTCCTGATTATAACAGCAATACACGTGCAGTGAATCGCCACTGGACACTAACTTCTCCGATTATCCATTTGGAAACATATTTTCTAGAACGTCTGAAGTAGCTGACTGAAGAGGATTTGGTGTAGCCTACTTCTTAGACATTTCAGGGCAGTATTAGACATTTCAGGTCAGTGGAACAAAAGTCGAGCAAGGCATTGGTCATAGCCTACACGTGTCCTTCTGTGTCTCTAAAGTGGACGCAAACATGACGACTGAGAGCTCACAGCAACATCTGGTCCCGTCTCATCCTCTGAGATGCAGCCCAGCAGCCGGAGTGATGCACGCCACACCGATGAGCGCACAGCCAGTGGCGGAGAGCTCAACAAATGCATCAACCAAAGGGAAAAAGGGCAACTCTGGCTTGAGGCGACCTGAGAAACCGCCCTATTCATACATCGCCCTCATTGTGATGGCTATCCAAAGCTCCCCGACAAAGACGCTTACTCTGGCAGAAATATATCAGTTCCTTCAGGCCCGTTTCCCGTTCTTTATGGGGTCttaccagggctggaaaaactcAGTGAGGCACAACCTGTCTTTAAACGAGTGCTTCATCAAACTGCCTAAGGGCCTCGGCAGACCAGGGAAGGGCCACTACTGGACTATAGACCCGGGCAGCGAGTTTATGTTCGAGGAGGGATCCTTCCGTCGCAGACCTCGCGGATTCCGTAGGAAATGCCAAGCTCTGAAACCAATGTATCGAATGATGAATGGCATCGGTTTTGGAGCGTCGATACTTCCCCAAAACTTTGATTTCCAGAACCCCTCCGCGTCCTTGGCATGTCATGCCAACGGTTACAACCTGGACGTGATGGGGAACACGATGCCAGGGAGCTACGACGGGCTGGGTGGAGGGCATCATGTCCCTCATATGTCACCAAGCCCCGGGTCCACCTACATGGCGGCTTGTCAGGTGGCGTCTAATGGAGACTACTGCCCGGACAGCAGTAGTAGCCCTTTGCACACCTCCCCGGCTGCGATGGCAGTGGGCACTTTGGACTGTCATTCTCCCTACGCCAGTGCTTCTCCCTACGCCAGTGCCCCCTCACACTGGGCATCACCTGGTGTGTCTCCATATATCAAGCAGCAATCCCTGGCCTCAAACAGTCCCACATCCTCCGCCTTGCACTCCAGCATGTCCCCATACTCTCTGGAGCAAAGCTATATCCATCACAACGGAAGGGACTCATCTGACATTTCAGTGGGATTATCTCGATACTCAAGCCCTTCATCGCCAGTGTGTGACaggaaagatttttttttaaactttaacgGAATTTCTTCGTTTCACCCGGCGACTGCCAGTGGATCATACTATCACCAGCTACATCACCATCACCAGAGCGTCTGTCAGGATGTCAAGCCATGCATCATGTGAAATAAACGCAATAAGACCATTGCCATCTTGGATGAAGCTCACATGAACTACACTATATACAAGCTCTACGCTTATACCATTTGTCCCTTGCCAAGTCCGGTACAAATATCTAAGACGAATTAGGGGAATGTAGGCTATGTATACATAACGTATTTGTCTCTGAGAAGGTCTGTGTCACGACACCATTCCGGAGAATTTAAAAACGACTGAGTGCATgaagtaaaaattgaaaaaatgcATGTATTGCCATTGTCCAACACGTCAATCACGGCTCAGACAGCTCGTCCATGCCATGATCTATTCAGAAGTTATTGTATCATTCAATATTGTAGGTTAGTGTGTGAGTACCAGTTATCGACATGGATAAAATGTAATATCCAACCACATTAAATGTGTTTACTTAAAAATACATGCACATTCACCCCGGGTTATCTTTAGCTATTTGCACTTACATCTAGACCCCAgagttttcttttttttaaagatttcgCTGTAGGCTACAGCAAgccaataaatatatatatttgaaaactGTTTGGGTTAGTTTTTATTCAAAGGTAAATGTATACAGCAAGGGAATTATTTCCCAAGATTGCGTTTGAGACAATTTTACCACTTTATGACAATGAGGTGTTTTGGTATGTTGTTTTTGTTATTGCAAACCTTAATATAACTGTCGTTATTGTTATAGCATATTATTTTAATTC

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841143 lncRNA upstream 145602 69553785 ~ 69554031 (+) True G740840
TU841141 lncRNA upstream 145962 69551452 ~ 69553671 (+) True G740839
TU841088 lncRNA upstream 193671 69505749 ~ 69505962 (+) True G740790
TU841087 lncRNA upstream 194090 69505257 ~ 69505543 (+) True G740789
TU841081 lncRNA upstream 197303 69502115 ~ 69502330 (+) True G740783
TU841421 lncRNA downstream 35805 69739123 ~ 69739334 (+) True G741094
TU841431 lncRNA downstream 41772 69745090 ~ 69745594 (+) True G741104
TU841436 lncRNA downstream 60765 69764083 ~ 69764429 (+) True G741109
TU841445 lncRNA downstream 71669 69774987 ~ 69775199 (+) True G741118
TU841446 lncRNA downstream 71964 69775282 ~ 69775497 (+) True G741119
XM_021613504.2 mRNA upstream 5671 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 108594 69578994 ~ 69591039 (+) False LOC100499175
XM_021613502.2 mRNA upstream 108594 69578995 ~ 69591039 (+) True LOC100499175
XM_021613500.2 mRNA upstream 122817 69562986 ~ 69576816 (+) False dusp22b
XM_021613501.2 mRNA upstream 122817 69563111 ~ 69576816 (+) True dusp22b
XM_021613507.2 mRNA downstream 22009 69725327 ~ 69727474 (+) True LOC110530442
XM_021613514.2 mRNA downstream 399847 70103165 ~ 70127450 (+) True wrnip1
XM_021613516.2 mRNA downstream 432137 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA downstream 432623 70135941 ~ 70148930 (+) True dhx30
XM_036986882.1 mRNA downstream 469113 70172431 ~ 70186472 (+) True LOC110530450
TU841127 other upstream 161357 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 694517 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 792668 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 840880 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1777011 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 922903 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1992284 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2001325 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2001325 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 2010410 71713728 ~ 71715616 (+) True G742860

Expression Profile