RNA id: XM_021613507.2



Basic Information


Item Value
RNA id XM_021613507.2
length 2148
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110530442
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69725327 ~ 69727474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTAACTCCGAAAAAGTATTCTGTAGTGACGGATGCCCAAAGTTCAGACGTTTTTCCATGTGCGCCTCAGCACACAGAGATGGAAACCGCTTATACCTATTAAGACACGGTACAGCGCGTTCCTGATATTATCATTTTTCAAGTGACAGGACAGCACCTCAGCTTTTCAGAAGGAAAAAGTGGAGCTCTCCCGCTGCATACATTGGGAAGTTCGTTTTACGCAGGAGCATAGTTGAGCTGTGGGTAGAAGAAGACATGCAGGCGCGCTACTCCGTCTCGAGCCCCAACTCTCTGGGCGTCGTGCCTTACATTAGTAGCGACCAAAGCTACTACCGGGCCGCTGCTGGTGGAGGATACACCGGGATGCCGGCCCCTATGAGTATGTACTCTCACGCGGCCCACGACCAGTACCCGGCCAGCATGGCGCGAGCCTATGGACCATATACCCCGCAGCCCCAGCCGAAAGATATGGTAAAACCGCCGTACAGTTACATTGCGCTTATTACTATGGCTATCCAGAACTCGCCTGACAAGAAGGTTACCCTGAATGGGATTTATCAGTTTATCATGGAGAGGTTCCCGTTCTACCGAGACAACAAGCAGGGCTGGCAGAACAGCATCAggcacaacctctctctcaacgagtgttttgtcaaagttccCCGTGATGACAAAAAGCCTGGCAAGGGGAGCTACTGGACCCTGGACCCGGACTCATACAACATGTTCGAGAACGGCAGCTTCTTGAGGAGGAGGCGACGGTTCAAGAAGAAAGACGCAATGAAAGACAAGGATGACCGGGGTGCTAAGGAGACACCGTCTAGACAGGGCCGGGACACGGAGCAGCCAATGCAGGGCTCCCAGCCTGTCAGGATTCAGGATATTAAGACCGAGAACGGGAACGCTACACCCCCACAGACCGCCTCGCCCTCCCTGAGCACAGTGCCCAAAGTCGAGAGCCCCGGcagcggcagcagcagcagcatgtcCAGTGGTGGCAGCCCCCACAGCATCCCGTCCAACAGGTCCATTGGCATGGAGAGCTccgagcagcagcagcagcaccaccacAGCCAGGCCCAGGCACAGGGCTTCAGTGTGGACAACATCATGACTTCCCTCCGGGGGTCCCCACAGGGTGCCACAGAGCTTGCCCCATCCCTCGTCGCCTCATCCAGGACAGGTATAACACCGTCTTTGTCCCTAAGTTATTCACCGAACCAGACGTCAGTCTATAGCTCACCCTGTAACCAAAACTCTATCTCCACTACCTCGAATGCGTCCTACCATTGTAATATGCAAGCAATGAGTTTATACGCTGGGGATAGATCTAGCCACCTAGTTCCTACTACCACCGTGGAGGAAACGTTGCCAGATTACTCCATCACTACAACCCCCTCCTCTCTGGCCCACGGCAATCTAAACTCTGCGCAAGAGGGCCACCATCCCCACCAAGGGCGTCTTCCCTCATGGTACCTCAACCAGGCCGGGGACCTGGGCCACCTCGGGGCGACCTACCCCACCCAGCAGCAGAACTTCCACTCCGTGCGCGAGATATTCGAATCTCAAAGAATTGGCTTGAATAATTCTCCAGTGAACGGGAATAACAGCTGTCAAATGTCCTTTCCTTCTAGCCAAGCCATCTACCGCACCCCGGGAGCTTTCGTATATGACTGCAGCAAGTTCTGACCAAAGTTTATTGTATTGATCTTTTTCATAAAAATAACTTGAGTCGTTTCCCCCACCACCTGCCCCAAAAGATGGACTAAAACGAACAGAAAAGGACAGAAAAAAAGACATGATCTTGGTTTGTAAAGAACAGTGTTACTGCAAATAACACGTAAGTCTCTTCTCGCTTTTGTGAAATGTTTAAAAGATATGCTAAAGATATGCCAGTCTTTCATGGACATACTATAACGTGTAAATTGCATATAGTAATTTATTTCTAAACTGTAGCCGGATATTATGGACCAAACACCAAAAAGTGTTTCTAAATTGAATTGCCTTAATTGTCCGAAGATGTTCCATTATAAAAAGCGGAACCTGTATATCGTCCTACTCTTTCAAAGTTTCTCCTTTTGTTGAAAAGTATTCTGAAGGAATTTCATTGTTTGTttaataaattgacattttattTGAGTTAAAGCTA

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU841143 lncRNA upstream 171296 69553785 ~ 69554031 (+) True G740840
TU841141 lncRNA upstream 171656 69551452 ~ 69553671 (+) True G740839
TU841088 lncRNA upstream 219365 69505749 ~ 69505962 (+) True G740790
TU841087 lncRNA upstream 219784 69505257 ~ 69505543 (+) True G740789
TU841081 lncRNA upstream 222997 69502115 ~ 69502330 (+) True G740783
TU841421 lncRNA downstream 11649 69739123 ~ 69739334 (+) True G741094
TU841431 lncRNA downstream 17616 69745090 ~ 69745594 (+) True G741104
TU841436 lncRNA downstream 36609 69764083 ~ 69764429 (+) True G741109
TU841445 lncRNA downstream 47513 69774987 ~ 69775199 (+) True G741118
TU841446 lncRNA downstream 47808 69775282 ~ 69775497 (+) True G741119
XM_021613505.2 mRNA upstream 22009 69699633 ~ 69703318 (+) True foxf2a
XM_021613504.2 mRNA upstream 31365 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 134288 69578994 ~ 69591039 (+) False LOC100499175
XM_021613502.2 mRNA upstream 134288 69578995 ~ 69591039 (+) True LOC100499175
XM_021613500.2 mRNA upstream 148511 69562986 ~ 69576816 (+) False dusp22b
XM_021613514.2 mRNA downstream 375691 70103165 ~ 70127450 (+) True wrnip1
XM_021613516.2 mRNA downstream 407981 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA downstream 408467 70135941 ~ 70148930 (+) True dhx30
XM_036986882.1 mRNA downstream 444957 70172431 ~ 70186472 (+) True LOC110530450
XM_021613521.2 mRNA downstream 723533 70451007 ~ 70460534 (+) True LOC110530454
TU841127 other upstream 187051 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 720211 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 818362 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 866574 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1802705 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 898747 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1968128 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1977169 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1977169 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1986254 71713728 ~ 71715616 (+) True G742860

Expression Profile