RNA id: XM_021613514.2


Basic Information

Item Value
RNA id XM_021613514.2
length 2256
RNA type mRNA
GC content 0.50
exon number 7
gene id wrnip1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70103165 ~ 70127450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCCCGTCCTAGGCAGACAGAAATGGTTCACATGCTGCAAGTGAACACAAATCTTAAGTGttctttttcattttttaaactgctataataaatgtaaaatattatatttttataAAGTGTCGGTGTTATGGTCACGTGGTGAGGTCAAGTTTAGCGGGAAAGAAAACATGGCGAGCGAAGTAGAAGGTAGCGTTGCGGAGCCAGTACAATGTCCCGTTTGTTTTAAGGATTTCGCGGCGTCAGAAATCAATGCCCATCTGGACAGATGTTTGTTAAACAATGACAGTTGTCCGACATCAACCAGTAAAGAAATGAACGGACCACCTCTCAAGAAACCTCGCATTTCTAGCGAAGCGTCTAGTCCAACAGTCAATACGACAGAGTCGTCAGAGGCGAGGAAAAGTACCACGCCGCCCTCTCCGATTTTCAGGATGTTTCAGACCAACATAAATAagggtccagttcaaagtgaacgaAATACATTTTTATCGAATAAACCGATTGCCAGCACTGCTGTCAGCAAAGGAACGAAACGTCATTCACCGGACGAGATGGGGACAGGTAAGGCGATGGGACAGTTTTGCATCGAGCCCCCTGCATCGAACACACTGATAAAGACCCCGCGTGATACAACACCTGTGCGCGCACTGCTGAATATCGATAAGCCACTGGCGGATAAACTGCGACCAACAACGCTAGAGGAATATTTCGGCCAAAACAAAGTAGTAGGAGAACACACCCTTCTCAGGTCGCTGTTGGATTCTCAGGAGATACCGTCATTGATCCTATGGGGACCACCTGGATGTGGGAAGACCACCCTGGCCCACATCATAGCCAGCGGCAATAAGAAGAGGGGCACGGCCCGCTTCGTTTCTCTCTCTGCCACCAGCACATCCACCAATGAGGTGCGAGAGGTCATTAAGCAGGCCCAGAATGAGTTAAAACTGATGAAGAGGAAGACCATCCTCTTTATAGATGAGATCCATCGCTTCAACAAGTCACAACAGGATACCTTCCTCCCTCATGTGGAGTGTGGGACAGTGACTCTGATCGGGGCAACCACGGAGAACCCTTCGTTCCAGGTGAACGCGGCTCTGCTTAGCAGGTGCAGGGTCCTGGTTCTGGACAAGCTGTCTGTGGAGGCAATGGGGTCGATCCTGCTCAGGGCCGTCGCTATGCTGGGGATCAGTGTACTGGGAGAAGATCTCAACGACCGCATAGATCAAGACGAGTTAGACCCAACCAAGCTCAGATCAGAACCAAAGGTCTATATTGAGCAGAAGGCTCTGGACACCATAGGACACCTGTGTGACGGCGACGCCCGGGCGGGGCTCAACGGACTCCAGCTGGCTGTCCAGGCCCGGGTGGGTGCAGCCCGCCCTGGCCAATCAGGATCTGGCAGTACCTCAcgtgacattgtggtgcaggagGAGCATGTGAAGGAGGGCCTTCAGAGGTCCCATATCCTCTACGACAAAGCAGGTGAGGAGCACTATAACTGCATCTCAGCGCTGCACAAATCAATGAGGGGCTCCCACGAGAACGCTTCCCTCTACTGGCTGGGCCGCatgctggagggaggagaggacccCTTGTACGTGGCTCGCAGACTAGTCCGCTTCTCTAGTGAAGACGTGGGTATGGCAGATCCCTCTGCCCTTCCTCAGGCTGTATCTGCCTTCCAGGCCTGCCACTTCATCGGGATGCCAGAGTGTGAGGTGATCTTGGCTCAGTGTGTGGTGTACCTGGCCAGGGCTCCTAAGTCGGTAGAAATCTACAAGGCGTACGGTAACGTGAAGGCCAGTCTGAGGAACCATAAGGGCCCCCTACCCTCTGTTCCCCTGCACCTTCGCAACGCCCCCACCAAGCTCATGAAGGACCTGGGCTACGCTGAGGGCTACAAGTACAACCCTGCCTTCAGTGCCCCTGTGGAGCAGGACTACCTGCCTGAGGAGCTCCGAGGAATGGACTTCTTCACCTGGAACCCCTCTGACCTATAACCTTTGAGGTTGACCCATGACCTCTGGCATCTGAGGTGAAGGTTACTGTGAGGGTTATAATGCTAAAGATCAATTTTTGTGCTATGAGGACCTCTGAAAATGCTGCTGGATCTAACACAAATAGAACACTTAAGTATAAGACCAATTTTGAGTTCAATGATATCActttgttaaataaatgtaatctTGTATTGTAGATTGTTACCATTATGTTGATATATTTTGTTCAATAGACTTATAAATAAACAGAGGGA

Function

GO: NA

KEGG:

id description
K07478 ycaJ; putative ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841756 lncRNA upstream 40805 70055936 ~ 70062360 (+) True G741425
TU841748 lncRNA upstream 54797 70048141 ~ 70048368 (+) True G741417
TU841700 lncRNA upstream 101968 70000866 ~ 70001197 (+) True G741369
TU841489 lncRNA upstream 255731 69847173 ~ 69847434 (+) True G741162
TU841488 lncRNA upstream 257568 69845381 ~ 69845597 (+) True G741161
TU841831 lncRNA downstream 40013 70167463 ~ 70168134 (+) True G741494
TU841836 lncRNA downstream 45835 70173285 ~ 70173781 (+) True G741499
TU841887 lncRNA downstream 144298 70271748 ~ 70275710 (+) True G741547
TU842007 lncRNA downstream 307715 70435165 ~ 70435374 (+) True G741665
TU841996 lncRNA downstream 314021 70441471 ~ 70463579 (+) True G741654
XM_021613507.2 mRNA upstream 375691 69725327 ~ 69727474 (+) True LOC110530442
XM_021613505.2 mRNA upstream 399847 69699633 ~ 69703318 (+) True foxf2a
XM_021613504.2 mRNA upstream 409203 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 512126 69578994 ~ 69591039 (+) False LOC100499175
XM_021613502.2 mRNA upstream 512126 69578995 ~ 69591039 (+) True LOC100499175
XM_021613516.2 mRNA downstream 8005 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA downstream 8491 70135941 ~ 70148930 (+) True dhx30
XM_036986882.1 mRNA downstream 44981 70172431 ~ 70186472 (+) True LOC110530450
XM_021613521.2 mRNA downstream 323557 70451007 ~ 70460534 (+) True LOC110530454
XM_021613522.2 mRNA downstream 336398 70463848 ~ 70493098 (+) True LOC110530455
TU841127 other upstream 564889 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1098049 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1196200 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1244412 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2180543 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 498771 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1568152 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1577193 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1577193 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1586278 71713728 ~ 71715616 (+) True G742860

Expression Profile