RNA id: XM_021613516.2


Basic Information

Item Value
RNA id XM_021613516.2
length 4265
RNA type mRNA
GC content 0.54
exon number 20
gene id dhx30
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70135455 ~ 70148930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAACAGCCGGCGTTTGTATTTCAAACATGGCGCTGCCCGGTTCAGTACTCGTGCGACTCAGAGCGTTGTGTAACCTTGGGAAATCTTTGGATACAGGGAACACAATTGGACACAATTACAATCGGGTCCGGTGGTACAAGACAAAAGCCAAGAGCAATCAGGACACTGCAGCGTCAGCGGGCCAGACAAGACGGGGTAGTGAGCTGCTGAAAGAGTTCCCTGAACCGAAGAGCCTGCTGTTTACCACCATATCCCGGTCGCTTGGGGTGTCTGACCTCTCCCAACACATCCAGTACCATTGCACAGAGGATGGGGGTCTCAAGAGAGCCACTGTCACACTCCTCTGGCCCAGCAAGATGGAGGTGGAGGGCTTTGCTCGCAAGAAGATTGATGCTGAACgatacgctgctgctgctgcctgtcacAAGCTGAGGGAGATGGGTGTGCTGGGTCCAGACAATCAGGTGGCCAGGAGGAGTGTGGGACGAGGGCGAAGACCGCCACTGTCAGCCTTACAGGACCTGGAGGAGTGTCGGTGGACAGATGTCCATGTGCCTAGAAGAGACCTCCAGAATGGATCCTTGGAACCTCACATACAATCAAGTGTATACAGGGCACCTGAGGAGAATTCTGAGCTCTCCCAGGCTCTTTCCATGTTCGTAAATCCTAAAGCTCTGCTGACCAGGGTCATCCAGGTGGCCACGTCCTCCAACAGATTCAGGGAACTGGTACAGTACAAGACGGTGGGCGGTAAGATGAAGAGATGTGAGCTGACCATGCGATGGCCAGAGGAGATTACGTTTGTGGCCTCGGCTCTTCGCAGAGTcgaggcagagaggagagctgCTGCACTGGCCTGTCTCAAACTGAAGGAAATGGAGCTGCTAGATGAGGACAACCAACCTCTGACCCATGCTAAGTACCACAAGGAGGAGATGCGTGAGgcggggcagagagacagagagccctgCCATCTGGAGATACCCGAGTACTTGGAGCATAGCACCAGAGAATACCTCACACAGTATCCAGTGGCGACAGAGATGCAGAAgctgtgggaggaggaggaggagagaagccaGCAAAGGTTGAACCAGCAggacgaagaggaggaagaggaccttGTCACAGACGCCATCACAGGCAGGCCATACCGGCCCCTCTCTACCCAGGAGGCCGAGCAGCTGAGCTCCGACCTacaggaggagtgggagagggcaGGGCCTGGCCTGGGGGTGGAGCTCCCAGTCGACTCCCACCGGGAACGCGTTGTGTCAGCGGTGGAGTCCTCCAGGGTCATTGTGGTTGCTGGGGAGACGGGATGTGGCAAGACAACGCGTATCCCGCTCTTCCTTCTGGAGGGGCGTGTGCGGATCGGGGAGGGAGCGGAGTGTAACATCTTGGTCACCCAGCCTCGGAGGATTAGCGCTGTGTCAGTGGCTCACCGTGTTGCCCACGAGATGGGCCCCGCCCTCAAACGCTCTGTAGGGTATCAGGTGCGTCTGGAGAGCCGTCCCCCGGAGCACAGCGGTGGGGCCCTTCTCTTCATGACGGTGGGGGTGTTACTGAGGAAGCTGCAGGGTAACGCCTCCCTGAGGGGGGTTAGCCATGTGGTGGTGGATGAGGTCCACGAGAGGGACGTCAATACGGACCTGCTGCTGGCCCTGCTGCGACCCGCCCTAAGGGACAACCCCAACCTCCGCGTCGTGCTGATGAGCGCCACAGGGGATAACCAGAGGCTGGCCCAGTACTTCGGGGACTGCCCTGTGGTCAGTGTTCCCGGGTTCATGCACCCTGTCAGGGATCGGTACCTGGAGGAGGTCCTTAGGGAGATGGGGAGACCACCGCCACCCCCGGCAAGGACAGACCTGCAGGGACGGGAGAAGGATGATGCCACGCCAGACCTGGACTTAGTAGCTAATGTGATAGAGCACATCCACAGACAGGGAGAGCCAGGTGCAGTGCTGTGTTTCCTACCAGGTTGGCAGGACATTAAGGCTGTCCAGAAGAGACTAGAGGAGAAGCCAACCTTCCAGTCTGGCTCTCAAATGATCCTACCATtACACTCAAGTATGTCGGTGGGTGACCAGCAGACCGTGTTCCAGCGCCCTCCTGAGGGCCGGAGGAAGATCGTCCTGGCCACCAACATCGCTGAGACCTCTATCACCATCGACGACATTGTTCATGTAGTAAACGCGGGCTCTCAGAAGGAGCAGAACTATGACACACGGACCAAGGTGTCATGTCTAGACACAGTCTGGATCTCGCGCTCCAACGTCACTCAGCGTAGAGGGAGGGCGGGGCGATGCCAGCCCGGACATGCCTACCACCTGTTCCCACGGCAACGCCTGGAATCAATGACGACCTTCCCTGTGCCTGAGATCCTACGCACCCCTCTGGAGAGCCTGGTGGTACAGGCCAAGATCCACAGCCCCCACTGCAAGGCAGTGGATTTCTTATCGCAGGTGTTGGACAGCCCAGAGCGAGAGGCTGTGACCGATGCTGTTCGCAACCTGCAAGAGATTGgTGTTCTGGACAAGACAGAGGCCCTGACTCCCCTGGGGGAGAGAGTAGCCTGTCTGTCCTGTGACCCGCGCCTGGGGAAGGTGCTGGTGCTTGCTGCTCTGTTCCGCTGTGTCCTGCCCCTGCTGTCAGTCACAGCCTGTCTCACCAGAGACCCTTTCCACAACAGCATGCAGAACAGAGCCCTGGTCTCTAAGGCTAAGGAAGACCTGGGAGGTTCAAGCTACAGTGATTACCTGGTGTTCAGTCGAGCCGTGTTGGGCTGGAGGAGTGTTCagcaagagagggacagagagaccagacaggaCTACTTGAACAGATACACACTGTCTGGAGCCGGCCTGCGCTTCATCAATgGTCTGACTTCCCAGTTCAGTGAGAACCTCCTTGAGGCTGGGCTGGTGGAGCGTTCAGCTGACTGCCAGAGATCCTCCTCCCTCTACAACCAACACAGCCACCAGGACGAGCTGGTCAAGGCTGTGCTGCTGGCCGGACTCTACCCCAACCTCATACAGGTGAAAAGGGGAGCAGTGACCAAAGGTCGCTTCCGCCCCAACAGCCTGTCCTTCCGTACGCAGAGTGGGCCAGTGCTCCTACACCGCTCCTCCGTCAACAGGGGAAAGGAGCAGTTTCCCAGTCGCTGGCTGACCTTCTTCAGTGCAATCAAGTCCAACGGTAATGTCTTCATCAGAGACTCCTCAGCAGCCCACCCCCTCGCCCTACTTCTGCTCACCGACTGTGACATCACTGAGAGAGTGAATGGTGACCGTGTGGAGGTGGCGTTCCCGGGGCGGTCGCTGGTACGCTGTGAGCTGTCTGTCCAGACATGGGAGCTGCTGTGGGAGCTACGCTCCTCCATCCAGACCATGCTGTACCGCAACCTCCACCCACACAGCTCAGCCAATTACATCACACAGGATGGCAAGCTCATCTCGCTATTGGTGGAGCTGCTGAACAATACTGAGTCCAATACAGACCCCCAGCCAAACGGTGGCCACAGTGACTCTGAGGTAGACTGATTCACTCGCATTGGAATAAAGGAATGTCAAAGCACTGTGGATGGAGTACTGCTTTGTGACCTGAAAAAACACTGGATGGAGTACTGCTTTGTGACCTGAAAAAACTCTGGCCGTAGCAAGAGTCCATAGATTTTTCTGGTCAGGAAAAAAGTACCAATGCAAAATGCTCGAGGCACGGTCTGCTGACAAATCTGAGAAGACATGTAATATCGGTTAACTGTACAATACTATCCATAGTTCACTACCCATTCTAAATGTCCTCCTCACCTGAGATACACGGAGAAATAATGAGAATTTTTGGAAATATAGATGAATGGGAACACTGAGTTTACAATGGAGTTCAGGAAAATACATCATGCCCTGAAGGTTTGACTCTTAAACTATATTTCAAGAGCCCCATTTAAATAGGAGTGAACTCATGGTACTGTAAATACTACTGTGATTGCTCTCTATATGGGAGGAAATCCATTTGTTTGACTAGATTATGGACTCAAGtatatttgttttttgaaaagcAGAAGTTGAATGAATCTGACTGTTAATGAGTGTCTAGTGACCTGTGCACTACAGTGAGACGGTGTCAAGATGACAGCGAGACGGTGTCAAGATGACAGCGAGACGGTGTCAAGATGACAAAATAATGATTACATGAATGTATTGTTaaccattattttttatttaaatatggTCTGTTGAAATATAAAGATGTTAAACAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841789 lncRNA upstream 28390 70106153 ~ 70107065 (+) True G741455
TU841756 lncRNA upstream 73095 70055936 ~ 70062360 (+) True G741425
TU841748 lncRNA upstream 87087 70048141 ~ 70048368 (+) True G741417
TU841700 lncRNA upstream 134258 70000866 ~ 70001197 (+) True G741369
TU841489 lncRNA upstream 288021 69847173 ~ 69847434 (+) True G741162
TU841831 lncRNA downstream 18533 70167463 ~ 70168134 (+) True G741494
TU841836 lncRNA downstream 24355 70173285 ~ 70173781 (+) True G741499
TU841887 lncRNA downstream 122818 70271748 ~ 70275710 (+) True G741547
TU842007 lncRNA downstream 286235 70435165 ~ 70435374 (+) True G741665
TU841996 lncRNA downstream 292541 70441471 ~ 70463579 (+) True G741654
XM_021613514.2 mRNA upstream 8005 70103165 ~ 70127450 (+) True wrnip1
XM_021613507.2 mRNA upstream 407981 69725327 ~ 69727474 (+) True LOC110530442
XM_021613505.2 mRNA upstream 432137 69699633 ~ 69703318 (+) True foxf2a
XM_021613504.2 mRNA upstream 441493 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 544416 69578994 ~ 69591039 (+) False LOC100499175
XM_036986882.1 mRNA downstream 23501 70172431 ~ 70186472 (+) True LOC110530450
XM_021613521.2 mRNA downstream 302077 70451007 ~ 70460534 (+) True LOC110530454
XM_021613522.2 mRNA downstream 314918 70463848 ~ 70493098 (+) True LOC110530455
XM_021613534.2 mRNA downstream 367558 70516488 ~ 70525948 (+) True rpe65a
XM_036986090.1 mRNA downstream 556144 70705074 ~ 70743483 (+) False LOC110530463
TU841127 other upstream 597179 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1130339 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1228490 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1276702 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2212833 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 477291 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1546672 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1555713 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1555713 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1564798 71713728 ~ 71715616 (+) True G742860

Expression Profile