RNA id: XM_021613534.2


Basic Information

Item Value
RNA id XM_021613534.2
length 2755
RNA type mRNA
GC content 0.46
exon number 13
gene id rpe65a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70516488 ~ 70525948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGTCCCATACATAGGGGACTTAACGTTTATAGACCCCAATGTACACAAAGTACTGTATTACTCCATAGAAATGTACATTTAAATAAGCAATACTCAGCCGAGATAAGCATTTACACAGTAACTCTGAATCACTCATGCATATATACAAGTCAAGAGCATAAGGCCCATTTGAAATTTGTGCCTTTTGACTATTGTTAATGTTCTGCCAAATAGTCAATTGAGCAGGAGGGTAAGGGAAATCTATCCCAGTTACAAAATGTAGTCTACAGGAAAGTAGAAAATAATTACATTAATTTAGTGAAATGCCATGAATGTATCTATCTATAGGCTCTCCCTGCTACTTTGGTTTGGTAAATATATAAATGATTGAACAATCACATCTTATGTTATTGCAACACATTTGCCAGGCAAACACAGGCAAAATAAATCCGGTTTTAGAGGGCCACCATTGTGCAACCAAGCTAAGGATATTGGCACAATGGCATTCTTTCTCACGATGCAACCTGATTGGTCAAGAGAAAGGTTACAGCCACTCAGGgtcgagaaagagagaggggctcGATGTATAAAGACGCTAAACCCACTGGGAGCGCCAAGACTTCCAGTTCAGAAGTGATCTGAAGCCACctgtatgtgagtgagtgtgtgtctctgtgctcccACAACAAGGAGGAACCATGGTCAGCCGATTTGAGCACCCTGCTGGTGGCTACAAGAAGATCTTTGAGACAGTTGAGGAGTTATCAGAGCCTGTCCCTGCAACAGTTACAGGTAGGATTCCTTCATTTCTGAAGGGAAGTCTTCTTCGTCTGGGCCCTGGCCTGTTTGAGGTTGGAGATGAGCCTTTCTACCACCTCTTCGATGGCCAGGCCCTCATGCACAAATTCGACTTCAAAAATGGCCAAGTCACCTACTTCAACAAGTATGTTAAAACAGATGCCTATGTGCGTGCCATTACAGAAAAGCGTGTGGTGATCACTGAATTTGGCACCTTCGCCTACCCAGATCCCTGCAAAAACATCTTCTCCAGGTTTTTCACTTACTTCAAGGGTGTTGAGGTGACAGACAATTGTCTGGTGAACGTTTACCCCATCGGTGAAGATTACTACGCCGTCACAGAAACCAATTACATCACTAAAGTCAACACTGACACGCTGGATACACTGAAGAAGGTGGACTTGTGCAACTACGTCAACATCAATGGAGTGACAGCCCACCCACACATTGAGAGAGACGGAACAGTGTTCAACATCGGAAACTGCATGGGGAAAGGAGCATCACTGGCCTACAACGTTGTCAGAATCCCACCCACTCAGAAAGACAAGTCAGACCCCATTGAAAAGTCCAAGGTTGTGGTGCAGTTCCCCAGTGCCGAGAGGTTCAAGCCCTCCTATGTGCACAGCTTTGGCATGTCGGAGAACTACTTTGTCTTTGTGGAGACCCCTGTGAAAATCAACCTGCTGAAGTTCCTCAGTGCCTGGAGCATCCGAGGCTCCAACTACATGGACTGCTTTGAGTCCAACGAGGTTCTCGGGACATTGTTCCACATCGCCAGAAAGGACAttggaggaggacaaggagaataCATTGACCATAAGTTCAGGGCCGCTCCCATCAACCTGTTCCATCACATCAACACTTATGAGGACAATGGTTTCATCGTGGCTGATGTGTGTACATGGAAAGGGTTTGAGTTTGTGTATAACTACCTTTGGCTGGCCAACCTGCGCTCCAACTGGGAGGAGGTGAAGAAGGCAGCCATGATGGCACCTCAGCCAGAGGTCAGGAGATACGTCATCCCACTGGACATCCACAGGGAGGAGCAGGGAAAGAACCTGATATGCCTGCCGTACACCACGGCCACAGCAGTGATGCGTACTGACGGGACAATCTGGCTGGAGCCTGAGGTGCTGTTCTCTGGTCCCCGCCAAGCCTTTGAGTTTCCTCAGATCAACTATGAGAAGCACGGTGGGAAGAACTACTCATATGCCTATGCCCTGGGCCTCAACCACTTCATTCCTGACAGGATCATCAAGCTGAACGTGAAGACCAAGGAGACCTGGGTGTGGCAGGAGCCGGACTCCTACCCCTCAGAGCCTCTCTTTGTGCAGACCCCCGATGGCGTGGATGAGGATGATGGAGTTCTGTTGACCGTTGTAGTATCCCCCGGGGCCCAGAAGTCAGGGTacatgctgatcctcaacgccAAGGACATGTCGGAGATCGCCAGGGCAGAGGTGGACTGCCCTATACCCGTCACCTTCCACGGAATGTACAAGAAATAACATTTCAATAATCCTCCAGGCACAAAGACTAGTAGTCACCATTCCACGGTATTCATACTAAGCATCACATTTCCCTCAGCAATAGAACAAAcaaataaagtaaagtaaagtataGGCTACAAATAACTTGGCTTGTTGTGTCAGCAAAAACGAGACAAGTATCTGATCATCTCCCATCATGATTTAACTTTCTGCCACCTACGATTCAGTATGGTTGGGTGTCCATTTTGATGAAAATGTACCATTTCGTGGTATGAATGGAACCTGCTGGTATCAGGGCATAAGTAGGTTTCCTACAATTATTTCTCAGTGAGCCCACAGCATAACAACATCAGCGGCCTCTCAGTCACGACACCCTGATTGGTTAATACAATTGTTGTGTCAGTGCTGGAAATCAATGAGTTTGTTCACAGTACCATGTCTCTTGAGTACTTCAGGGTTGGAATAATTAAAATATAATCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841995 lncRNA upstream 556 70507850 ~ 70515932 (+) True G741653
TU841996 lncRNA upstream 52909 70441471 ~ 70463579 (+) True G741654
TU842007 lncRNA upstream 81114 70435165 ~ 70435374 (+) True G741665
TU841887 lncRNA upstream 240778 70271748 ~ 70275710 (+) True G741547
TU841836 lncRNA upstream 342707 70173285 ~ 70173781 (+) True G741499
TU842050 lncRNA downstream 2710 70528658 ~ 70532557 (+) True G741704
TU842100 lncRNA downstream 78528 70604476 ~ 70606732 (+) True G741748
TU842471 lncRNA downstream 93166 70619114 ~ 70619350 (+) True G742087
TU842478 lncRNA downstream 99199 70625147 ~ 70625422 (+) True G742094
TU842492 lncRNA downstream 113314 70639262 ~ 70640529 (+) True G742108
XM_021613522.2 mRNA upstream 23390 70463848 ~ 70493098 (+) True LOC110530455
XM_021613521.2 mRNA upstream 55954 70451007 ~ 70460534 (+) True LOC110530454
XM_036986882.1 mRNA upstream 330016 70172431 ~ 70186472 (+) True LOC110530450
XM_021613516.2 mRNA upstream 367558 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA upstream 367558 70135941 ~ 70148930 (+) True dhx30
XM_036986090.1 mRNA downstream 179126 70705074 ~ 70743483 (+) False LOC110530463
XM_036986088.1 mRNA downstream 180974 70706922 ~ 70743483 (+) False LOC110530463
XM_036986091.1 mRNA downstream 180974 70706922 ~ 70743483 (+) False LOC110530463
XM_036986094.1 mRNA downstream 180975 70706923 ~ 70732633 (+) False LOC110530463
XM_036986092.1 mRNA downstream 180975 70706923 ~ 70743483 (+) False LOC110530463
TU841127 other upstream 978212 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1511372 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1609523 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1657735 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2593866 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 100273 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1169654 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1178695 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1178695 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1187780 71713728 ~ 71715616 (+) True G742860

Expression Profile