RNA id: XM_036986088.1


Basic Information

Item Value
RNA id XM_036986088.1
length 4112
RNA type mRNA
GC content 0.44
exon number 22
gene id LOC110530463
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70705074 ~ 70743483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAAAGATAGAGGCAGCAGCACAAGCTGTGTCCTGACAGTTTCTAATTTCAGATATCTGACTGTAGCTAAGCAAACCACCGTCCAACTGAGGCTGGCTGCTTTTGTTGTCATGCTTGCCTGGTAGAGAGGGATTTATACTCTGTACAGTTGTTAAGAAAGACAAACCTTTGGagtagcacacagacagacaaggagaaggagaaggaaacaGAGGAACATGGTACATTCTGAAGGAATGATTGAAGATCGTGGGAGGAGTGGCGACATCATGGCGGAGAGACGACAACTGTTCGCAGAGATGCGGGCACAAGAGTTGGATTCCATAAGATTGTCCACATATAGAACTGCTTGCAAACTCAGATTCGTTCAGAAGAAATGCAATCTCCATTTGGTGGACATCTGGAACGTGATCGAGGCGTTCAGAGAGAACGGCCTGAACACCATGGACCTCAACACAGAGTTCACTGTGGCTCGCCTGGAAGCAATACTATCGACCATCTTCTACCAGCTCAACAAGCGCATGCCCACCAcacaccagatcaatgtggaacaGTCCATCAGTCTGCTACTCAACTTTCTCCTGGCTGCCTATGACCCGGAAGGCCTCGGAAAAATGTCTGTCTTTGTTGTGAAGATGGCCCTAGCAACCATCTGCGGAGGAAAGATTTTGGATAAATTAAGATATATTTTTTCACAGATATCAGACCCTGGTGGCATAATGGTGTACTCCCAATTCGACCAGTTTCTGAGGGAGGTTCTCAAATTGCCAATGACTGTTTTTGAGGGGCCTTCCTTTGGCTATACTGAGCAAGCCACAAGAACCTGCTTTGCACAGCAGAAAAAGGTCTCCCTCAACACATTCCTGGACACGATGATGTCAGATCCTCCTCCTCAGTGTCTGGTGTGGTTACCACTCATGCATCGCTTGGCTAATGTGGAGAATGTGTTTCACCCGGTCGAGTGCTCCTACTGCCACAGTGAGAGTATAATGGGCTTCCGCTACCGCTGCCAACAATGTCATAattaccagctctgtcaggactgCTTCTGGAGGGGGCATGCCAGTGGTTCCCATAGCAACCAGCACCAAATGAAGGAGTACACGTCATGGAAATCGCCTGCTAAGAAGTTATCTAATGCTCTCAGCAAATCACTGAGCTGTGCATCTAGCAGAGAACCTTTACACCCCATGTTTCCTGACATGCCAGAAAAACCTCTGAACCTAGCCCACATTGTAGACACTTGGCCTCCCAGACCAATGAATAGCACCAATGACTTCATGCTCTCCCACTCCATGCCCACGTCAGGGAACCCTTACTCCACTAAGAATTTGCTGGAGAGCAGTTCCCACCAGGAGGAAGAGCACAGTCTCATCGCCCGCTACACTTCTAGACTGGCCTCTGACGCAGCCGCCGCGcaacagcagcagaggGTCCCCAACGACATATCTTTCTCTCTGGATGCCAACAAGCAGCAGAGGCAGCTTATTGCTGAGCTAGAGAGCAAAAACAGaGAGATCTTGCAGGAGATCCAGCGTCTGAGAGTGCAGCACGAGCAGGCCTCACAGCCTCCCACATGCACGTCCCAACAGAACCCCACTCTGCTGGCCGAGCTACGGCTTCTCAGGCAACGCAAAGATGAGCTGGAGCAGAGGATGTCTGCTCTGCAGGAGAGTCGCAGGGAACTCATGGTACAGCTGGAGCAGCTGATGCTGCTGCTGAAGgaggaggaaaggaagcaaGCTaCTCAGGGACCTGGCTCCCCCCGCTCGTCTCCCAGCCACACAGTCAGTCGGTCCATCCCCATGCCAACCCAGTCAGAGTCTGCCGGCACCACACCCACTCACACCCCTCAGGACTCACTCATGGGTGTGGGAGGGGACGTGCAGGAGGCCTTCGCTCAGGGCCCCAGGAGGAACTTGAGAAATGACCTCCTTGTTGCAGCTGACTCCATCACCAACACCATGTCTTCATTGGTTAAAGAGCTCAATTCAGAGGCTGGAAGTCAATCAGAGAGCAACATGGACTCTCAAACAGATGAACTGTTCTCCTCTCCCACTTCCGATCCTCTAGCACAGATGACCACTAAACCACGTCTTGGTGGCAGGAACCCTGGTGGAGTTGAGGAGGAGTGCTATGAGAACGACTTGGTTCAGGTGCTGGAGGATGAGCTGAAGATGGGGGAACTACTAAAACACAGACGGGAGCAAGAGAAACCCCATATGGTGACTTTGCAGCAATGACCTTGTCATATTCCTGGTAAGCAATATGAAAAGCCACAAAAGTAGAAAAACACTGGAAGATGGATGAGAAGAGCAGGCATATAGAGAAGGCTGTGGAGAGATGATGGTCCACATGCATGCAAGTCAAACTAAAAAAGAAGTGACAAGGAGGAAGGATCAAAGTTATGACACTGCTAAATCCAACATATTATGTAAAGATCTATTTTTTAAACCAACAGCATTTTTAAGTGAATACTGTGAACCGATATGGAGGGATTATTAAACAAAACAGCTGTCTATTATACCACCGGTGCCATAAAATTGAATAACTTTGTTGAGAATTATTTGATTTTTAATCATATTATTTTTGGGTATGAGTTGTTGAAGAATTGTGCAAGTATATGCTGTAGTTCATTTTTCCCTGGGGCCACATtcggtcttcaacgaggtccgGAGGGTCGCACTGAATTGTTTAAAATATTTCCTTGCTGTCAAAATTTGCAAAAAATTGTCCACTTATCCATCATTTTGGGAATTTTCTATGCTCTCTGACTGTTTAGAGTTTATTAGCGAGCTGGACTGTCAAGAAACTATGAGTATAGGTCCAATATCATTTCTACACAGTTGTGATTAGAttttagtctttttttttttcattttaaagtatattttTACTCCAACCACCCACGGGCCAGATTGGACACCCTCCGACCTGCGGGCCGTGccgtatgtttgacacccctgctgtagGTGTATTGCTGGTGAGATTGCTTTTTAAACCAAATAGTAAACTTGGTATATGTGTAAACTGAGGCACAACTGTCTATAACCCAGAGGGTAGCTACAGTATGTCTGACGCTATGACCTGGTTGGCCCATCAGTCGAATGATACTGGTGTTGTATCGCTTTTGTATTTGTTGTTTGACTGTTTAGCTTTTTGATTGAGTGGCTTGTCAGATAGTTTATTTTATTTGCCTTAGCTGGTTAGCTTAGCTCACATTTGGATGGGGTACAGTCAGACCTTCAATGCAGCATGTACTGTAGCTAACATTGTTCCAGCCACTGATACATTTATATTCACTGTCAAAATCACGTTGTTTATTTCACCCACAAGTATTGCCTAGTAGTTAATAGTACTGTATTACGTAATACAACTGCAGAAGAGGAACAATGTTATTTGCCCTCTTCTGCATGTTGTGTTTGCCACATTGCAAATTTTATTTAATTCCACCTGGAGTATTAAGCCGTTAGGTGATACTAAGAGAATCAGACAGTATAAGACAAAGAAGCTGAACCTATGATACATCTAATGCTGGAAAGTGATATTGTCTACTGAAGGATTTTGTTAACTAATAGCTATACTTTGATTAAGAGTtatagtttattttattttattaatagcTGCTTGAGGTTTGAAGATGTGACGACATAAATGAAATTGGAGTAGGGAATACAGTACGTAGACAGTACATAGTAGATAGaatggacagtacagtacatataaCGGACAACATTGTTTATAACACTCCAGATTCTAAGGTTTACACTTGCAAGAACAGAGGACATTGTTTGTTTACCATGTATTAGAATCAACATCTTCTGTTTTACCATAGATTTTGAAGTTTAAATGTTCTGACCAAATTATTAGCGTTCttatactcactcacacacacatctctcacaAACatacactcacagtcacacacttgGTAACCAAGCTCATTGTGTGTAAATGTTACCCAGTCACTTTACAATATGTGGTGCAAGCCAATAAATGTGTGAAATATATCTAGTATGATTTTCAAGCTAGTTCGTATAAGTGATTTTGCATGGTGGTGATGATGCATAATAAAGAATTGACACAACATGATAATGTTGTTGCCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842515 lncRNA upstream 28025 70678694 ~ 70678897 (+) True G742131
TU842514 lncRNA upstream 30248 70675587 ~ 70676674 (+) True G742130
TU842504 lncRNA upstream 48470 70658249 ~ 70658452 (+) True G742120
TU842500 lncRNA upstream 54331 70652140 ~ 70652591 (+) True G742116
TU842499 lncRNA upstream 55794 70650336 ~ 70651128 (+) True G742115
TU842591 lncRNA downstream 69465 70812948 ~ 70813165 (+) True G742195
TU842624 lncRNA downstream 126086 70869569 ~ 70869813 (+) True G742220
TU842626 lncRNA downstream 127086 70870569 ~ 70870774 (+) True G742222
TU842628 lncRNA downstream 129370 70872853 ~ 70873079 (+) True G742224
TU842632 lncRNA downstream 133020 70876503 ~ 70876781 (+) True G742228
XM_021613534.2 mRNA upstream 180974 70516488 ~ 70525948 (+) True rpe65a
XM_021613522.2 mRNA upstream 213824 70463848 ~ 70493098 (+) True LOC110530455
XM_021613521.2 mRNA upstream 246388 70451007 ~ 70460534 (+) True LOC110530454
XM_036986882.1 mRNA upstream 520450 70172431 ~ 70186472 (+) True LOC110530450
XM_036986069.1 mRNA upstream 557992 70135941 ~ 70148930 (+) True dhx30
XM_021613542.2 mRNA downstream 14521 70758004 ~ 70771560 (+) False LOC110530464
XM_021613541.2 mRNA downstream 22140 70765623 ~ 70771560 (+) True LOC110530464
XM_021613543.2 mRNA downstream 87228 70830711 ~ 70841350 (+) False LOC110530465
XM_021613544.2 mRNA downstream 87241 70830724 ~ 70841350 (+) False LOC110530465
XM_021613546.2 mRNA downstream 87294 70830777 ~ 70841350 (+) False LOC110530465
TU842479 other upstream 80178 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1168646 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1701806 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1799957 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1848169 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 952119 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 961160 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 961160 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 970245 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1799243 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile