RNA id: XM_036986093.1


Basic Information

Item Value
RNA id XM_036986093.1
length 1999
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110530463
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70705074 ~ 70743483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAAGATAGAGGCAGCAGCACAAGCTGTGTCCTGACAGTTTCTAATTTCAGATATCTGACTGTAGCTAAGCAAACCACCGTCCAACTGAGGCTGGCTGCTTTTGTTGTCATGCTTGCCTGGTAGAGAGGGATTTATACTCTGTACAGTTGTTAAGAAAGACAAACCTTTGGagtagcacacagacagacaaggagaaggagaaggaaacaGAGGAACATGGTACATTCTGAAGGAATGATTGAAGATCGTGGGAGGAGTGGCGACATCATGGCGGAGAGACGACAACTGTTCGCAGAGATGCGGGCACAAGAGTTGGATTCCATAAGATTGTCCACATATAGAACTGCTTGCAAACTCAGATTCGTTCAGAAGAAATGCAATCTCCATTTGGTGGACATCTGGAACGTGATCGAGGCGTTCAGAGAGAACGGCCTGAACACCATGGACCTCAACACAGAGTTCACTGTGGCTCGCCTGGAAGCAATACTATCGACCATCTTCTACCAGCTCAACAAGCGCATGCCCACCAcacaccagatcaatgtggaacaGTCCATCAGTCTGCTACTCAACTTTCTCCTGGCTGCCTATGACCCGGAAGGCCTCGGAAAAATGTCTGTCTTTGTTGTGAAGATGGCCCTAGCAACCATCTGCGGAGGAAAGATTTTGGATAAATTAAGATATATTTTTTCACAGATATCAGACCCTGGTGGCATAATGGTGTACTCCCAATTCGACCAGTTTCTGAGGGAGGTTCTCAAATTGCCAATGACTGTTTTTGAGGGGCCTTCCTTTGGCTATACTGAGCAAGCCACAAGAACCTGCTTTGCACAGCAGAAAAAGGTCTCCCTCAACACATTCCTGGACACGATGATGTCAGATCCTCCTCCTCAGTGTCTGGTGTGGTTACCACTCATGCATCGCTTGGCTAATGTGGAGAATGTGTTTCACCCGGTCGAGTGCTCCTACTGCCACAGTGAGAGTATAATGGGCTTCCGCTACCGCTGCCAACAATGTCATAattaccagctctgtcaggactgCTTCTGGAGGGGGCATGCCAGTGGTTCCCATAGCAACCAGCACCAAATGAAGGAGTACACGTCATGGAAATCGCCTGCTAAGAAGTTATCTAATGCTCTCAGCAAATCACTGAGCTGTGCATCTAGCAGAGAACCTTTACACCCCATGTTTCCTGACATGCCAGAAAAACCTCTGAACCTAGCCCACATTGTAGACACTTGGCCTCCCAGACCAATGAATAGCACCAATGACTTCATGCTCTCCCACTCCATGCCCACGTCAGGGAACCCTTACTCCACTAAGAATTTGCTGGAGAGCAGTTCCCACCAGGAGGAAGAGCACAGTCTCATCGCCCGCTACACTTCTAGACTGGCCTCTGACGCAGCCGCCGCGcaacagcagcagaggGTCCCCAACGACATATCTTTCTCTCTGGATGCCAACAAGCAGCAGAGGCAGCTTATTGCTGAGCTAGAGAGCAAAAACAGaGAGATCTTGCAGGAGATCCAGCGTCTGAGAGTGCAGCACGAGCAGGCCTCACAGCCTCCCACATGCACGTCCCAACAGAACCCCACTCTGCTGGCCGAGCTACGGCTTCTCAGGCAACGCAAAGATGAGCTGGAGCAGAGGATGTCTGCTCTGCAGGAGAGTCGCAGGGAACTCATGGTACAGCTGGAGCAGCTGATGCTGCTGCTGAAGgaggaggaaaggaagcaaGCTACCTATGGAGATTCATAACTTCATGAATTCCACCCACCCAGCTACCCCCCATGCTAACAGGACAACACCCCAATCACAAGAGACCAACAGTCCAGCAAGAAAGCTATGCAGTAGCAACACAAAGAATAGAGCACCCTGCTGCAGCCGAGCTAAACCAGACGAGGCATCTGCTGAACAGAATCTGCAAACAAATCCATGAATTCCTTCTTTCTTATTATCAGAAATagaataataaaaaatacaaccTATTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842515 lncRNA upstream 28027 70678694 ~ 70678897 (+) True G742131
TU842514 lncRNA upstream 30250 70675587 ~ 70676674 (+) True G742130
TU842504 lncRNA upstream 48472 70658249 ~ 70658452 (+) True G742120
TU842500 lncRNA upstream 54333 70652140 ~ 70652591 (+) True G742116
TU842499 lncRNA upstream 55796 70650336 ~ 70651128 (+) True G742115
TU842543 lncRNA downstream 4583 70737216 ~ 70774362 (+) False G742154
TU842545 lncRNA downstream 4583 70737216 ~ 70774362 (+) True G742154
TU842591 lncRNA downstream 80315 70812948 ~ 70813165 (+) True G742195
TU842624 lncRNA downstream 136936 70869569 ~ 70869813 (+) True G742220
TU842626 lncRNA downstream 137936 70870569 ~ 70870774 (+) True G742222
XM_021613534.2 mRNA upstream 180976 70516488 ~ 70525948 (+) True rpe65a
XM_021613522.2 mRNA upstream 213826 70463848 ~ 70493098 (+) True LOC110530455
XM_021613521.2 mRNA upstream 246390 70451007 ~ 70460534 (+) True LOC110530454
XM_036986882.1 mRNA upstream 520452 70172431 ~ 70186472 (+) True LOC110530450
XM_036986069.1 mRNA upstream 557994 70135941 ~ 70148930 (+) True dhx30
XM_021613542.2 mRNA downstream 25371 70758004 ~ 70771560 (+) False LOC110530464
XM_021613541.2 mRNA downstream 32990 70765623 ~ 70771560 (+) True LOC110530464
XM_021613543.2 mRNA downstream 98078 70830711 ~ 70841350 (+) False LOC110530465
XM_021613544.2 mRNA downstream 98091 70830724 ~ 70841350 (+) False LOC110530465
XM_021613546.2 mRNA downstream 98144 70830777 ~ 70841350 (+) False LOC110530465
TU842479 other upstream 80180 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1168648 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1701808 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1799959 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1848171 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 962969 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 972010 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 972010 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 981095 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1810093 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile