RNA id: XM_021613542.2


Basic Information

Item Value
RNA id XM_021613542.2
length 1256
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110530464
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70758004 ~ 70771560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGTTCTTTGTCGAATGAAACATGTGTACGTTATCGGCGTCATCAGCTCCTACAATGAGTGGAAAGAGGGTGGGGTGACTCAGGAAAATAGCAGCTTTTGAACACCGAATAACCTGAAATCTGAGTTCACTGTTGGGGGATGGCGGTCAACGTATATTCTACCTCAATAACCCAGGAGACTATGAGCAGGCATGATATCACTGCCTGGGTTAATGATCTTCTCGGTCTGAACTACACTAAAGTGGAGCAGCTTTCCTCAGGAGCAGCCTACTGCCAGTTCATGGATTTGCTGTTCCCTGGTTGCGTCCATCTTAAGAAGGTTAAGTTCCAGGCTAAATTCGAGCATGAGTACATTCATAACTTCAAGCTGCTGCAGGCCTCTTTCAAGAGAATGAATGTGGACAAGATTATTCCTGTGGAGAAGCTTGTGAAAGCCAGATTTCAGGACAACCTTGACTTCATCCAGTGGTTTAAGAGGTTCTTTGATGCCAACTATGACGGTAAGGATTACGACCCACTTCAGGCCAGACAGGGTCAGGATGCCATCCCCCCACCTGACCCCGGTGAGCAGATCTTCAACCTGCCAAAAAAGTCCCAACACCACGCAGCCAGCTCCCCCACTGCAGGAGCCACCAGGGCAAGTGCAACAACTCCGAAACAAAACCCCTGCAGCCCCCATCCATCCTCCAGACCCTCTTCAGCGAAAAGAATCCCAGTTGCAACTCCAACGACAACTCCGGCCAAAGGAGAGCGGGAACTGGAAGCACAGGTCACAGGGCTCAACGACCAGGTGAACACATTAAAACTTGCACTTGAGggtgtggagaaggagagggacttTTACTTTGGAAAGCTGCGGGATGTGGAAGTCCTGGCACAGGAACAAGGTCAGGAGAGCGCCCAGTTCGTGGAGCGGCTAATGGAGATTCTGTACTCTGCAGACGAACAGGAAGGtgcaggagaggtggatggagaagATGTGGATCCAGGGGTCCATGAAGAGGATGTTCCTGATGATCAGCAGGATGAGTACTGACTGCCATCACTCCTTGTTCTTGCCCCGGGCCCCACCACAACGCCATGCCCTTTTGTTTTGTGAGAATTTTGTTAcaggttttattttttattatttttttctcatttgtaTTTTCTTCCCCTCGtggtttgtttattttttttgttctcCTGAAGACTGAGCACATGAAACAACCTCATGCAAAGAAACATGACCCtagtttattttatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842515 lncRNA upstream 79107 70678694 ~ 70678897 (+) True G742131
TU842514 lncRNA upstream 81330 70675587 ~ 70676674 (+) True G742130
TU842504 lncRNA upstream 99552 70658249 ~ 70658452 (+) True G742120
TU842500 lncRNA upstream 105413 70652140 ~ 70652591 (+) True G742116
TU842499 lncRNA upstream 106876 70650336 ~ 70651128 (+) True G742115
TU842591 lncRNA downstream 41388 70812948 ~ 70813165 (+) True G742195
TU842624 lncRNA downstream 98009 70869569 ~ 70869813 (+) True G742220
TU842626 lncRNA downstream 99009 70870569 ~ 70870774 (+) True G742222
TU842628 lncRNA downstream 101293 70872853 ~ 70873079 (+) True G742224
TU842632 lncRNA downstream 104943 70876503 ~ 70876781 (+) True G742228
XM_036986090.1 mRNA upstream 14521 70705074 ~ 70743483 (+) False LOC110530463
XM_036986088.1 mRNA upstream 14521 70706922 ~ 70743483 (+) False LOC110530463
XM_036986091.1 mRNA upstream 14521 70706922 ~ 70743483 (+) False LOC110530463
XM_036986092.1 mRNA upstream 14521 70706923 ~ 70743483 (+) False LOC110530463
XM_036986089.1 mRNA upstream 14521 70706924 ~ 70743483 (+) True LOC110530463
XM_021613543.2 mRNA downstream 59151 70830711 ~ 70841350 (+) False LOC110530465
XM_021613544.2 mRNA downstream 59164 70830724 ~ 70841350 (+) False LOC110530465
XM_021613546.2 mRNA downstream 59217 70830777 ~ 70841350 (+) False LOC110530465
XM_021613545.2 mRNA downstream 59230 70830790 ~ 70841350 (+) False LOC110530465
XM_036986096.1 mRNA downstream 59328 70830888 ~ 70841350 (+) True LOC110530465
TU842479 other upstream 131260 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1219728 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1752888 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1851039 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1899251 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 924042 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 933083 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 933083 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 942168 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1771166 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile