RNA id: XM_021613544.2


Basic Information

Item Value
RNA id XM_021613544.2
length 2959
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110530465
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70830711 ~ 70841350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTAATGGTTAGCGCTCAAGTAGTTTTGCTTTGCTATTGGTGCAAAGTTTCCCGGGAATATTACGTGTCAACCACAATTTCGCGCCAAATTCATTGCAGCCGCACGACATAGCTACATCCTACAGAAGCTACTCAACCAGATTTTATATCTAGGACCTGTGATCATTCAGGATGTCTTCACCAACATCAACTCCCGTTGGAAGCAAGCGCAGTAGGGATGACATTCCAGTCACTCCCAGCAGTGATGGCCTGGCCTCTCCTCCTTCCCAGCGGCGACGAGGTCAGGACTCATCCAACGGGGATCTGCCAGCCATGCCCACATCTCCAGCTACAGATATTGCCAGCCCTGCAGTCCATGACACCTCTCTGTTCTCCAGCCCACGCCGTTCAGTTCTCCCCAGTGAGGTGGACATGAGCTCCCCTCTGATGTACGGGACTCCTAGCTCCAGGTTGGAGGGTACCCCCCGCAGTGGTGTGCGTGGCACCCCAGTCAGACAGCGCCCTGACCTGGGCTCTGCCAGGAAGGCCCCCCAGGTGGACCTCCACACAGAGCTGCCAAGTGCAGATGGTGCAGTAGCCAGTGAGCAGGCAGCGGGACAGAAGCTGGTTATCTGGGGCACTGATGTCAATGTGGGAACTTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATTGACCCCACTTCTAATGAGGATGAGAATGCTGGTTTGGACCTGAATGAGCCTCTCTACATGCAGAAGCTGGAGGAGATCAGTGTGATTGGTGACCCTGTGCTGAATGTCAACTGCAGCCATGTGCAGTCCTTTGATGCAGACCTGTACAGGCAGCTCATCTCCTACCCCCAGGAAGTCATACCTACATTTGACATGGCCGTCAATGAGCTGTTCTTCGAGCGTTTCCCAGACTCCATCTTGGAACACCAGATCCAGGTGCGGCCATACAACGCCCTGAAGACCAGGAACATGAGGAGCCTAAACCCTGAAGACATTGATCAGATGATCACCATCAGCGGCATGGTGATCAGGACCTCCCAGCTGATCCCAGAGATGCAGGAGGCCTTCTTCCAGTGCCAGGTGTGTGCCTTCTCTACCCGTGTGGAGGTGGACCGTGGCCGCATCGCAGAACCTGCAGTGTGCCGCAACTGCAACACCACCCACAGCCTGGCCCTCATCCATAACCGCTCTGCCTTCTCCGACAAACAGATGATCAAAGTTCAGGAGTCTCCTGATGACATGCCTGCTGGGCAGACCCCTCACACCACCATAGTGTACGCTCACAACGACCTGGTCGACAAAGTACAGCCAGGAGACCGCATCAACATCACTGGTATCTACAGAGCGGTTCCTATGCGTGAGAACCCTCGCCAGAGCACAGTGAAGTCGGTGTACAAGACCCACATCGACGTCATCCACTTCCGTAAGACGGACGAGAAGCGCCTTCATGGGCTGGATGAGGATTCAGACCAGAAGCTTTTCACTGAGGAGCGCGTCCAGACACTGAAGGAGCTGGCCGCCAAACCAGACGTGTACGAGCGTCTTTCCTCCGCCCTGGCCCCCAGCATCTACGAACAAGAGGATATCAAGAAGGGTATTCTTCTCCAGCTGTTCGGGGGCACCCGTAAAGACTTCAGCCAGACAGGCCGCGGTAACTTCCGTGCCGAGGTAAACATCCTGCTCTGTGGAGACCCCGGTACCTCCAAGTCCCAGCTGCTGCAGTATGTGTTCAACCTGGTGCCCCGCGGTCAGTACACGTCTGGGAAGGGCTCCAGTGCTGTGGGCCTCACAGCCTACGTGATGAAGGACCCAGAGACCAAGCAGCTTGTACTGCAGACCGGAGCCCTGGTGCTCAGTGATAACGGGATATGCTGTATTGATGAGTTTGACAAGATGAGCGACAGCACACGCTCTGTGCTGCATGAGGTCATGGAGCAGCAGACTATCTCCATTGCCAAGGCTGGAATTATTTGCCAGCTCAATGCTCGCACCTCTGTCCTGGCAGCAGCCAATCCCGTGGAGTCTCAGTGGAACCCCAAGAAGACGACCATCGAGAACATCCAGCTCCCTCACACACTGCTGTCAAGatttgatctgatcttcctgATGCTGGATCCTCAAGACGAGGCGTACGACCGTCGCCTGGCTCACCACCTGGTGGCGCTCTACTACCAGAGCGAGGAGCAGATCGAGGAAGAGTTCCTGGACATGGCAGTGCTGAAGGACTACATTGCATATGCTCGCACTTACATCAACCCCAGACTGAACGAAGAAGCCAGCCAGGCACTCATTGAAGCCTATGTGGACATGAGGAAGATCGGCAGCGGGCGGGGGATGGTGTCTGCCTACCCCAGGCAGCTGGAGTCTCTGATCCGACTGGCCGAGGCCCATGCCAAGGTGCGCTTCTCTGACAAGGTGGAGACGGTCgacgtggaggaggccaagaGACTACACCGCGAGGCCCTCAAGCAGTCTGCTACAGACCCAAGGACTGGCTTCGTAGACATCTCCATTCTCACAACTGGAATGAGTGCCACGGCCCGTAAGCGTAAGGAGGAAGTGGCCCAAGCTCTGAAAAAAATGATCCAGTCCAGGGGAAAGACCCCTGCAATGAAATACCAGCAGCTGTTTGATGACCTCAGAGGACAGTCTAAAGCCgCAATAACGAAGGACATGTTTGAAGAGGCTCTGCGTGCCCTGGCAGATGAAGACTATCTGACCGTCACTGGAAAGACTGTTCGCCTGCTGTAAAGAAATACACGCATCTCCCTTCTTTCCTTGTACAGTCATTGAATTCACATGTATTTCCCTGTAGCAACAGCTTTTTCTCTGTACTGAATACTGGTGTGTAAAGAATGTTTGACCATGATGATGGCTAGCTTTGTATGCTTTGTGATTCCTGGTAGTGCTTGGTGTCTCAGATGTTTATTATGGTGCGCAATAAATAAATGCTATGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842591 lncRNA upstream 17559 70812948 ~ 70813165 (+) True G742195
TU842546 lncRNA upstream 56362 70725119 ~ 70774362 (+) False G742154
TU842624 lncRNA downstream 28219 70869569 ~ 70869813 (+) True G742220
TU842626 lncRNA downstream 29219 70870569 ~ 70870774 (+) True G742222
TU842628 lncRNA downstream 31503 70872853 ~ 70873079 (+) True G742224
TU842632 lncRNA downstream 35153 70876503 ~ 70876781 (+) True G742228
TU842645 lncRNA downstream 49028 70890378 ~ 70890861 (+) True G742241
XM_021613542.2 mRNA upstream 59164 70758004 ~ 70771560 (+) False LOC110530464
XM_021613541.2 mRNA upstream 59164 70765623 ~ 70771560 (+) True LOC110530464
XM_036986092.1 mRNA upstream 87241 70706923 ~ 70743483 (+) False LOC110530463
XM_021613547.2 mRNA downstream 157 70841507 ~ 70844897 (+) False LOC110530467
XM_021613548.2 mRNA downstream 157 70841507 ~ 70844897 (+) False LOC110530467
XM_036986098.1 mRNA downstream 1576 70842926 ~ 70844898 (+) True LOC110530467
XM_036986100.1 mRNA downstream 95054 70936404 ~ 70975314 (+) False LOC110530469
XM_036986101.1 mRNA downstream 95056 70936406 ~ 70975314 (+) False LOC110530469
TU842479 other upstream 203980 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1292448 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1825608 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1923759 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1971971 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 854252 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 863293 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 863293 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 872378 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1701376 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile