RNA id: XM_021613548.2


Basic Information

Item Value
RNA id XM_021613548.2
length 1545
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC110530467
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70841507 ~ 70844898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGCCATGGTGACCGGTAGTTTACACTTTggaatactgtatattattttaaaGACCTTTCTCAGCAGTCGGGTGTTAGTTACCCTGCATAGACCAAAAAGAGCAAGCAAAAACTCCCTAAATTTAGTCTTGAGTGGTccatcctcttctggctgtatcaGCTGAGGTCCTGTGTATATACTCAGCATTATTCTTCAGCTTATTTTGTAGCTGTGTAATGCGCACCTCCTGCTATTGACCACCTTGTCAGCCACATGCATCTTAAAATATTGTACAGAATCTAGTAGTGTATAGTCGAATACGAGGAAGGAACCGGTGGGAGCGTTTTCTGCAGACACCTAACCTGACACACCCCTCGTTTATGGCACTTTTTGTGTGCTTCTGGATTTGGCTGAAGAAGATGGCGGCCTCCTCAGGAGTTAAAGTTCCACGTAATTTTCGCTTGTTGGAAGAGCTTGAAGAGGGTCAGAAAGGTGTTGGAGATGGGACAGTCAGCTGGGGCCTTGAAGATGATGAAGATATGACGCTAACACGGTGGACAGGCATGATCATCGGACCGGCACGAACTAATTATGAGAACAGGATATACAGTCTGAAAGTGGAATGTGGTCCTAAATATCCTGAATCACCTCCAATTGTTAGATTTGTAACAAAAGTTAGCATGAATGGCATAAACAATTCCAATGGGATGgtggatACACGTAGCATACCAATTCTATCTAAATGGCAAACCTCTTATAGCATTAAAGTTGTTCTTCAAGAGTTAAGGCGTCTAATGATGTCCAAAGAGAATATGAAGCTTCCACAACCACCAGAAGGACAAACCTACAGTAATTAACTGTTGTTTACTTTTGACCCCTATTGTCTTAAATCGTATTCTCCTTGAAATGATTGTGTAGGCCATCACAATCGTGATGATTCTCACTCCACTATTTTAAGAATTTAGACTGAGCAAGATTGGACATTCCTTTTAGTTAGCCTATGGTCATTCTAGAACGTCCCCACTGCgagtgaaattatgtttttaaGACCACAAGTGTACACAGTTATTTCTCTTCTATTGAAGTTAGTGTGACCATTCACTTTATGATTGTGAGATGTATCAAGTTGGCTTTACAAGAGAAGAATGGCACCAAGTGTAtacccaagtcaaacaatttatGTTTCGAATGGCAGgtgactaaaataaataattgaaatgTGTGTATGATGGCATGCTTTAACAAATAAATAGTTGACCAAAAGCTACATTTAAATTGTAATTTAGTCAAATGTAGGAGGTATGTTGACATATCATGCAGATGAAGATTAACCAATGGCTTTAGGCCAGAAGTAGTGTCACAAGTTTTGAAGGATTTAAAAAAGTATATCTGTATTTGACACGATTCCAATAATGTTTCTGTTCTGCAGCTCTTTGAATTGTAACGTATGTTCAAGCCTGTTCTGTTCTGAAAAAAATACCCCATGTATTTAACTTCTAAAGAAAATTACAAGTTTATGACATTGCGATTTCTCTGACATTAAAATCACTGTCTTGAGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842591 lncRNA upstream 28342 70812948 ~ 70813165 (+) True G742195
TU842546 lncRNA upstream 67145 70725119 ~ 70774362 (+) False G742154
TU842624 lncRNA downstream 24672 70869569 ~ 70869813 (+) True G742220
TU842626 lncRNA downstream 25672 70870569 ~ 70870774 (+) True G742222
TU842628 lncRNA downstream 27956 70872853 ~ 70873079 (+) True G742224
TU842632 lncRNA downstream 31606 70876503 ~ 70876781 (+) True G742228
TU842645 lncRNA downstream 45481 70890378 ~ 70890861 (+) True G742241
XM_021613543.2 mRNA upstream 157 70830711 ~ 70841350 (+) False LOC110530465
XM_036986100.1 mRNA downstream 91507 70936404 ~ 70975314 (+) False LOC110530469
XM_036986101.1 mRNA downstream 91509 70936406 ~ 70975314 (+) False LOC110530469
XM_036986099.1 mRNA downstream 91510 70936407 ~ 70975314 (+) True LOC110530469
XM_036986120.1 mRNA downstream 290485 71135382 ~ 71412296 (+) False LOC110530474
XM_036986119.1 mRNA downstream 416270 71261167 ~ 71388423 (+) False LOC110530474
TU842479 other upstream 214763 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1303231 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1836391 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1934542 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1982754 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 850705 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 859746 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 859746 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 868831 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1697829 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile