RNA id: XM_036986100.1


Basic Information

Item Value
RNA id XM_036986100.1
length 4039
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC110530469
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70936404 ~ 70975314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTCTTGATATGTATTCCAAGCTAATATATTGCAAAATAGACTACTTTAAAAATCACAGTTTTGAAGAAAAAGATGTTGGAACTGGTTCATTTGAATCTGCTTTTGCATCAATTCGCCTTCACTGCAGGCTGATAGCAGCCCAGGGTCCCATTCAACAAAACCATACCGCAGTGCTCGCCGATAATTTCCTTTAAAAGCGCTCCTTGCACCGGAGACCTTTAGGTTGGATGTATCTTAGGCTATGTACATAGTAGATGCTCTTATTCAACAGTGAAAGTAATTTCACATCGGGAGAGATGTAAGAGCTCCGCGAGTATCCTAAACGAATAACTGAGGCGATTGACGTGAGTTGAAACAAATCTCATGTGATTTTCAGCCAGTCATTTTGGCACCAGAGCGCACAGTAAGGAAACATGTGAAACAGTATTCCATGCCATGCTGGAAATTACTGTCGACGAAAAGGATGCCGTGTCTTGTTTCTGCATGACtaatatggaaaaatacacgtttttaGTGTAAGTGTGGGATGTTTAACGGTTTTTGCACATTGCCTCAGTGTATTGGATAACGTGGGCGACGGTGCCAGGAAACGTGATTTTGCAGAGATTCTTTTGAATCTGTAGCCATCACTgaataaataaacacatttcagGACAGATTGATGTGAGGAGCAGACTGGAACCAATATTACATCACACCTGTTACCAGAAAATCAGCTCAATCTGGATCTGAGTGGAACTGCTCCTGAGTCCACCATCGGACACCCTCCGTAACCACTGTTGGAACTGTGGCAGCACATACACCAGGTCAGCCACTGCCCAGAGCCAACACCAAGCCCACCGCAGGCCAGGCCACCAGCTCCACGGGAGGGCATGCGTCCCCCCACAGCCATGCCCAGGGAAGCTCCTCTGCCACGGGTAGGATCAGTGCTCACCTGCCTGCTTCATGGCTAGACCTCTACAGACGAAGAGCCGGGGGCCTTTCTACTGAGGGCAGATTCCCTCACTGTACCATAGCACATGGATTTCAGGACTTCAAATGAAGAGACAAAGACTGGGGTTTATCTGCTGCAAGATGGTAACGAGGAGCCTTTCAATATTCGACTGCACTTGGCTAAAGACATTCTGACCATTCAAGAGCAAGATGTCATCTGCGTGTCAGGAGAACCATTTTATTCCAGTGAGAGAACTGTAACGATCAGAAGACAGACGATTGGAGGTTTTGGCTTGAGCATTAAGGGAGGCGCAGAACACAAAATCCCTGTTGTGATATCAAAAATATCAAAAGAGCAAAAAGCTGAACTGTCTGGGCTGCTGTTTATTGGAGATGGGATCCTCCAGATAAATGGAATAAATGTTCGAAGCTATCGCCACGAGGAAGCGGTGCAGGTTTTGCGAAATGCCGGAGAGGAAGTCACTCTGACTGTGTCTTTCTTGAAGAAGACACCTGCTTTTCTGAAACTGCCCCTCTGTGAAGACTGCACATGTGTTCCAAGTGACCAGAGCAGTGGAACGTCCTCCCCTCTGTGCGACAGTGGCTTACACCTGAACTACCATCCTAACAATACGGACTCACTGTCCTGCTCATCTTGGCCCACGTCCCCTGGGCTCCGCTGGGAGAAGAGATGGGTGGACCTGCGCCttattcctctcctccactcccgtCTGTCACAGCACATCCCGGGCTCTGACGTCTGCAGGAAACATGCATTTCAAGTCATAGCTGTGGATGGGGTTTGCAGTGGGGTTATCACGTGCCCCACTGCTGAAGATTGCCTAGATTGGCTCCAAGCAATAGCAGCCAATATATCAGCTCTCACCAAGCACAATGTGAAGAAGATAAACAGAAACTTCCCAGTTAATCAACAGaTTATCTACATGGGCTGGGTAGATGAGAAGGAGCAGGACTCCGGTCAGGACCGAATGTATTCACCAAAATTCCTCGCCTTAAAGGGTTCCTCACTCTTCAAGTTCTCAGCACCTCCTGTGACTACATGGGACTGGACCAGGGCAGAGAAAAGCTACACCGTGTACGAGATCATGTGTAAAGTTTTGAAGGACAGTGACCTCTTGGACAAGCGGAAGCACTGCTTCAGCATCCAGACGGAGTGTGGAGAGGACATGTTCTACAGCGTAGAGCTGGATTGTGAGCTGCTCATCTGGGAGAAGGCCTTTCAGATGGCTACTTTCCTGGAGGTGGAGAGAATACAGGCGGTGCTGTGGAGATACAAATTCTCCCAACTGAAAGGATCGTCTGATGATGGGAAGAGCAAGATCAAATTTCTGTTCCAAAATCAGGACAATAAAGCAATTGAAGCCAAGGAGCTGGAATTTTCGAACCTCTTTGCCGTGCTCCATTGTATCCATGCATTCtttgctgccaaagttgcttgCCTGGATCCGATGTTTGTGGAGAGTCAAGGTGCTGCGACTACCGCTGGGGGGGTTTCCACGCTCACCAGTGTCTCCTGTAATACACAGACATCCAGAATCAAATACTCCATCTGACAGAGCCTGCTCAGCccctctccttatccctctctcccaagTCCCCCCTCTCCCCTAAGACACTGCACTTTTACTACATCATGGcctagagagacagaggagagaccaCAAACGAGTGTGTTATACTGTATCCAAAGCCGTCTAATAAACAAGGACATGTGAATCCAACATTTGAAGTATTATTGACAGAACTCTTTTTTTTTCCTTCCGAAAGACACATTTGATATTTCATCAGAGAAAAGGAAGCTAGCTGTGTGAACTTTTTGACCAGTACATTGTACTGTACTTCGAAGAACATTGTAACACGAAGGAGTGAGTGCAGAACCAATGGACgtagaatggatggatggatgattatAAACATTCTGAATTCAGCTATTTGTCTTTGGTCAGATCCCCAGGCACCTTTCACAATGATTCATACGTGTTGTTGACACTGTTGTTAAACATAACATGATCGTGTTGCCAAGGCGACAAAGCAGACAAACTGTTTTCTACAATATTCAATCCGCTTCTTGAAGGTTTAAGTAGATTTTTGAAAAGGTACAGTATAAGGATGGTGACTATAAACAAATTGTTTTCTTCTTTTCGACCAAAGAAGATTTaaagaagacttcatttgatttCTGATGATTATAGCAATTATAAAGATGGTCAGTTGGTATTGCCATAATTTATCATTGGAAATGTAAATTagccacacaaaaaaacatgtccccctctctcttttcatgcATATTGATTTCTTAATGACCATGAGTAATGATTAGATTAATAAATATGGATTAGATGGCATCATGGCAGTGTAAACTGCAATGTTACATAGTTAAATAGTTTTCACCCTTGTGTGGTTGTATAATGAAGTTGAAAGCACTTCATATTCTCTAACCTATGTGTTTTGATTTATCTGAAAACATCTTTTAGTTCAACGAAGAAACACTGAAATAAGTGTGTATTATGGATTATACACAAATATGAAATTAATCAACCTCAAGGCACCTTTGAATTGTTTTGTTGTTGCCCATGACGTGGTTATAGTCCAACTATAAATATAAATCACATCATGTCAAATTGTATACGATTTCCTTTCAACACGACGGGGTCATATAGAGAGGGAATGACTCAGGTTAGATGTACGTGAGCATAGCTTGCTTTTTTTATTGATGTTGAGGAGAGGACCGGGATGAGTGCTGCTATGATGAGTCTGTCAGAGAGGCAATCGAGAGGTGTTTTTAATCAAGGCATTCTGCAAACAGTAATCCTTCACACACCCAACCTGGACTGGACCCGGATTATTAAGAACGGATTTCACAAAGTGAATCATTGACAATTATTTTGACGAAGTGCTACAGCCAACATAGTCAGTCAGATTCAGAACATGTGGTTGTGTGAAAATGTCTACACCTGGTCCTGCACTCACTGGAAGATATTGCTCTAAATACAATTCACTGAAATGAATGAAACTCTTTctgtaattacatttttttctgcTAATCTTGATGATGTAAATAAAGGTTGACATCCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842861 lncRNA upstream 8542 70923577 ~ 70927862 (+) True G742442
TU842647 lncRNA upstream 42440 70893740 ~ 70893964 (+) True G742243
TU842645 lncRNA upstream 45543 70890378 ~ 70890861 (+) True G742241
TU842632 lncRNA upstream 59623 70876503 ~ 70876781 (+) True G742228
TU842628 lncRNA upstream 63325 70872853 ~ 70873079 (+) True G742224
TU842881 lncRNA downstream 3041 70978355 ~ 71061889 (+) True G742451
TU842886 lncRNA downstream 15702 70991016 ~ 70992013 (+) True G742455
TU842911 lncRNA downstream 20803 70996117 ~ 70996825 (+) True G742473
TU842915 lncRNA downstream 36546 71011860 ~ 71012275 (+) True G742477
TU843008 lncRNA downstream 150784 71126098 ~ 71126300 (+) True G742567
XM_036986098.1 mRNA upstream 91506 70842926 ~ 70844898 (+) True LOC110530467
XM_021613547.2 mRNA upstream 91507 70841507 ~ 70844897 (+) False LOC110530467
XM_021613548.2 mRNA upstream 91507 70841507 ~ 70844897 (+) False LOC110530467
XM_021613543.2 mRNA upstream 95054 70830711 ~ 70841350 (+) False LOC110530465
XM_036986120.1 mRNA downstream 160068 71135382 ~ 71412296 (+) False LOC110530474
XM_036986119.1 mRNA downstream 285853 71261167 ~ 71388423 (+) False LOC110530474
XM_036986118.1 mRNA downstream 285857 71261171 ~ 71390395 (+) False LOC110530474
XM_036986117.1 mRNA downstream 285863 71261177 ~ 71412296 (+) True LOC110530474
XM_021613580.2 mRNA downstream 505650 71480964 ~ 71636112 (+) False asic1c
TU842479 other upstream 309660 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1398128 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1931288 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2029439 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2077651 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 720288 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 729329 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 729329 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 738414 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1567412 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile