RNA id: XM_036986118.1


Basic Information

Item Value
RNA id XM_036986118.1
length 5735
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110530474
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71135382 ~ 71412296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGTTCACTCACTGTCATCCATTTTACTCTCTGGGGGCTGAAATCCCTCTAGAGATCCTGTGGAGGAACTCAGATCAGTGGAGTTGGTGTGTTTTAATGCAGAGCAGCCGACCCATTGGGATCCGGTCCTTGTTTTCTGACCATCCCGGGGGTTGGGAAACTGCTGGAAAGTTCAGACAGACACACTCCCTCACGCTACGCACGGCAGGCAGCTCAGAGATGAAGGGTTTTGTCTGCACCACAGGCAGAAAAGGATTGCTCACAACTTGCCAAGAAGGATGTTTTTCATATGTCGCTCACGGCCTCTCAGGGACTCTATGACAAACATGTGTTTGCTTGTTCCAAAGCAAACAGTGGAATGGCTGTTTTAGCTGTCGCTCACCCTCACGTCGGACAGGTAGAAGAAGAAAGTAGAGGGGAGAATGCAACCAGCCAGCCACCATCCAGCCTTTTGCGGTGCTGCTGCTGAATGCTGAGTATAAGGCTGCAGGGTTATGGAGGTGGCACAGAGGCTTTGCTCAGGCTTGTTTGAAGTTTTTTTCCCATGTCAAAGGTAAAGGATTACCCGGGGGGTTGGAATGCAGCCTGGAAGTGAAGGTCTCAGAGAGCTACCCTAAACACCACCACACCGGGGAGAGGAGTGTGAGATTATGTTTGCTTTGCGACtgtgtgtatgtaggtgtgtgCGTGTAAGTTAGGCTAgtttgtgcatgcctgtgtgtgtgggggagttcAGAGTAGTGCCATGCTACTGCTGAGCAGTCGGGCTACGGAGCAGGCTATCCCCGGGGCCACAAGCAAAGCTGTAACATCCCACCAGTCAGGAGGAGGTAGGACCACGGTGTATCACATCTCTGTCATCCTGAATGGAACTTTGGGGCATGAGGAGGTgggtgagggggtgggggtgagggagggacTGGCCGCCAGACACGCCTCCCTGGAGCAGAGTCATCCGGCAGCCAGGAGCACCAGGGCACGGCCACAGGCGCTGCAGGGGAAGGAGGGACACTTCAGGCTTGGCAGGTGGCCCTCCCTGAGCCGTACAGGCAGagtgggggggaggagggaggaggcagtgcaggaggaggaggaggagggaagaaaaATGAAGACGGACCGGTTTCTCCAACTCCAACAGTTCTCTAGTAACTCAACAGCTCCAGCAGCAGCCCATCCTTCTCAGATTGACTGGGAGACTGCAGCGGTAGGAGTAGAGGTAAAGGCAGCTACAGCAGCTCTAGAGCAACAGAAGACCAAGGTAGAGACCCAGGGACAGGACGTTTCTCCCCAGACTGAAGGGCCTCTCCCTGGGAATCATGGTGGTGTCCCTGCCGGTGGTGTTCTGGCCGGTGGTGGCTCTCCACCCCGGGCTGTGCTCCGCAGGAGGCCATCCCAGGACGGTGCTGCTCCACACAACAGGAGGGCGGTGAGCATGTATGGAGCCGCAGCCAGGCAGCATCAAGGCTCGCTAAGCCgccaggacagacaggacaggcccAGGAGTGTGTGCATGCTCGCAGGCCCCAACCTCAACCCTACCCTATCAGAGCCCGGGTCCCACTCCCAACAGACCTCCAGGAGGGGGGCTACAAGGTCTCTGGACGGTCCCCCACAGCAGCGCTGGACCAGGAGGGCAGAGCTGCGGGCGGTGGACGGTCTTAAGCCAGGGGTGCTCCCTCAGTGGACGGTGGCGGGGGCTGAGGAGAAGGTGGTCCCCAGGGTCCGGCAGCAGACCTGGAAACCGAGACCGGTCAGCATGACTGTGTTGGAGCTGAGGAAGAAGGCCTCGGGGTCTCAGGAGGGGCTGGACAGCCAAGGAGGAAGCCAGGGGGGAGGTGTATTTGGCCGCTGGAGGCTGTTCGGCCGACCAGCTCAGGACAAGGAGAAGGAGGAAGCCCCAGACCCAGGCTCCAAGCCCAGCAGCAAGCCAGATGCCCCCAAGAAGACCCTGAGCTCCTTACGCCGGAGCCTCAGTCTGCGGATCAAGAGGAACCGGCCGCGGGAGAGAGTGGACATTTCTGAGTTGACATCAGAGGAACGCTCACGCACTACAAGTATGGAGCAGGAGACATCTCTCCCCTTGCGGCCCTTCTCCTATCTGACTGGGAGGACCCTGCCACCTCCTTACGAGAGGGACGATGATGGAGGGAGGCAGTTCATTCAGTACCACAGCCAGGGCAAGGTTAAGGTGATGGAGGTGCCTCTCTACCCAGCCAAACTGTCCTCCTCTACTAAACCGGCCCAGGAGGAGCCCAGTCTATGGCAGCTCATAGCCAGACGCTTTAGGAGGAAGGAGCAGCAGCAACCGTCCAACGGTAAATGTGAACTCCAGCCCCGACACCCGAGCAAAGAGACTGGCAAATATTCCCTGGGCAGGATTAAAAAGCCTCAGTCAGTTGCAATAGAGACTCTGGCAGACTGCAACAAAGTTCAAGACTCTTTCGTCAATAGCCAGGAGTGGACATTGAGTCGATCAGTGCCAGAGCTCAAAGTGGGTATTGTGGGTAATCTGTCGAGTGGGAAGTCTGCCTTGGTCCACCGGTACCTGACAGGCACATATGTGCAGGAGGAATCTCCTGAAGGTGGTCGGTTCAAGAAGGAGATGGTTGTTGATGGACAGAGCTACCTGCTGCTGATCAGAGATGAGGGAGGCCCCCCGGAGCTGCAGTTTGCAGCATGGGTAGACGCTGTGGTGTTTGTCTTCAGTCTGGAGGATGAGATCAGTTTCCAGACAGTCTACAACTATTTCCTGCGTCTGTCCAGCTACAGGAACACAGCAGAGGTCCCCATGGTCCTGGTTGGGACGCAAGATGCCATCAGTGCTGCCAACCCCAGAGTGATCGATGACTCGCGGGCGAGGAAGCTGTCCAACGATCTGAAGCGCTGCACCTACTACGAGACCTGCTCCACCTATGGCCTCAATGTGGAACGAGTCTTCCAGGATGTTGCCCAGAAGGTGGTGGCTCTGAGGAAAAAGCAGCAGCTGTCTATTGGTCCGTGCAAGTCCCTGCCCAACTCTCCCAGCCACTCATCAGTCCCCAATGCATCCATCCCCTCTGTGCATATTAACCAGtcGGCAAACGGCGGTGGTGTGTTCAGCGACTACTCCTCCTCTGTGCCCTCCACTCCCAGCATTAGCCAGAGGGAGATGCGTATCGAGACCATTGCTGCCTCCAACACGCCCACACCCATCCGCAAGCAGTCCAAGCGCCGCTCCAACATCTTCACTTCACGGAAAGCCAACAGTGAACAGGCAAAGAACACTGACAGTAAAACAGATAGCATAGGCAGTGGAAGGGCCATACCCATCAAACAGggcATCCTTCTGAAGAGAAGTGGGAAGTCCCTGAATAAGGAGTGGAAGAAGAAATACGTCACACTGTGTGACAACGGCCTTCTCACTTACCACCCCAGTTTACATGACTACATGCAGAATGTGCACGGTAAAGAGATTGACCTGTTGAGGACCACGGTCAAGGTGCCAGGGAAGCGACCACCCAGAGCGGTCACCGCCATCGCCCCCACCGCCAGCCCCAAGACCAACGGGCTGACCAAGGACCGTAGCACCCTGCAGCTAGGAGTGGGCACTGCAGgtgcgCCCCACTCTAACAGTAGTACGTCCCTCCAGTCAGAGCATTCGGTCGGCGGGGGAAATCTGGTGGGCTATGGGGGCAGTAAAGACGGCATGCACCAACGCTCCTTCTCTGTGTCCAGCGCTGACCAATGGAACGAGGCTGTCATCAACACCAGTGCAAGCACCGGGACCGCCAATGGGATGGCCGAGCCCCTGACCTGCAGCTCTGGGGTGGGCAGTGCCACCAGTCCCAAGCAGGAGCTCCCCCCCTCGCCTCACGCCAACCGCAAGAGACACAGACGGAAAAAGAGCACAGGCATCACCAAGCCAGACGGACCATCTACAGGCAACGAAGAGTCTGAGGAGTCGTTTGAGTTCACCATTGTGTCTCTGACGGGCCAGATGTGGTACTTCGAAGCGTCTACATTTgaggagagagagctgtgggtCACAGCCATTGAGAGCCAGATTTTTGCCAGCCTGCAGTCCTGTGAGAGCATGAAGAACAAGTCCCGGTTAGGCAGCCAAAGTGACGCGGCATCCATTCAGTCCATAAGGAACGTGAGAGGGAACAGCTTCTGTGTGGACTGTGATACAGCCAaccctgaCTGGGCCAGTCTGAACCTGGGGGCTCTGATCTGTATAGAGTGCTCAGGGATCCACAGGAACCTGGGGACCCACCTGTCGAGGGTGAGGTCTCTGGACCTGGATGACTGGCCTGTGGAGCTCAGCATGGTGCTGATGGCTATAGGCAACACCATGGCCAACAGTGTCTGGGAGGGTTCCCTGGAGGGGTACACCAAGGTGGGCGCTGACAGCACCAGtgtgtgtgtgtgacatcactTTGCACATACCTGCTAAATGCCTCTGACCAGCACCAAGTAAACCAAGGTCTggtcccctcttctctctccccaatGAGGGTTGTTTGTCTCTGGGTGACAGTTGAGGCCCAGCATGTCTCTCTGACTAATGACCCTGTGTGTGGATGAGCAGGTAATTAAGGAGCCCATTATGGTGTTAGAGCCCACCCCAGGGGCCGAGCCCCAGGACCCATCAGGGGCCTGTCACATATCCATCAAACAGGGCCCGGCTgccatcactctctctgtcccactataGAAGAATGGTCTGTAGTGTCTATACTGTTTCTGACCTACATTAAGAGAAGATGTAAAGATATACTACTCAAGTGCTAAATGGCTTGGTTTTTCATATTTTGGTCACTTTGTTACCATTTATTGTATTGGAGTCACTAACATTGAATAGTAATTTTAAACAACTGATTGTCAGAAGAAAACAGCATTTCTTATTATCTCATGGGTAATCGTTGATCAATGATTATTAAAATGCCGATATCTATTTGTTGGCAGAGAACTGGACAAAAGAGGAATAATTGTTTTCTCAGGATTCCATTACCTTAGCCCTGCTCCTCTAATACCACAAAGCATCTGTTGTGCAAATATAGGAGACAAAAAGGTGAATGAATACATTATCTCCAATCTGATCCCCACCATATAAATCTTACTTTGTTGTCTCGTCTATAGAGATTGAACATTAAGATTAAACTTCAAGATTGTTCTATCTCTATggtctcatcatcatcatcttccctTGGACTTGAAGTGGTTCTGATGTTAACTGTGTCACCGTGGTGACATGGTGCAGCTTTGTGATGGAACCCAGGCAGCTGGTGTAGCGTTCCCACCCCACCTCCTACTAAACATTAGTGACACGTAATTTAAACGACTCAGTAACTAGGCTACCTGAAGCTACCTGCCTCACATCTGATTGAATGTCTCCTGCAACACTAGTTCTGCCGGCTCGCTCCTCAGCTTTTTAAAAATTTTACTTAAAAGCCGTTCATCCACACGATTGGTTTAGCTTTTTAGAAATTCTTATGTGAAAGTAGAATGTACAGATTTGCATTATAGTCAGGTTTATGTAGATATCAACACTTGTCAGTACTAATCAACATGTAGGCTAGTTTTGTGGTGGTGTTTGTATTGGTTTGTATCTTTTGAAGGACTAAtacatttagtattttttttatcagACTTCTCCAGTGTCATCAATGGCTTTCAGATGTAGTTTAAATGTATCACCCAATAATTTCatgaataaaatgtatttatttgtatgcCATAAATGACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843064 lncRNA upstream 56365 71188546 ~ 71204806 (+) True G742611
TU843062 lncRNA upstream 66525 71189286 ~ 71194646 (+) True G742610
TU843008 lncRNA upstream 134871 71126098 ~ 71126300 (+) True G742567
TU842915 lncRNA upstream 248896 71011860 ~ 71012275 (+) True G742477
TU842911 lncRNA upstream 264346 70996117 ~ 70996825 (+) True G742473
TU843273 lncRNA downstream 166784 71557179 ~ 71562042 (+) True G742802
TU843215 lncRNA downstream 190022 71580417 ~ 71638350 (+) True G742748
TU843329 lncRNA downstream 262088 71652483 ~ 71652835 (+) True G742853
TU843330 lncRNA downstream 262811 71653206 ~ 71653434 (+) True G742854
TU843295 lncRNA downstream 288631 71679026 ~ 71682296 (+) False atg9b
XM_036986100.1 mRNA upstream 285857 70936404 ~ 70975314 (+) False LOC110530469
XM_036986101.1 mRNA upstream 285857 70936406 ~ 70975314 (+) False LOC110530469
XM_036986099.1 mRNA upstream 285857 70936407 ~ 70975314 (+) True LOC110530469
XM_036986098.1 mRNA upstream 416273 70842926 ~ 70844898 (+) True LOC110530467
XM_021613548.2 mRNA upstream 416274 70841507 ~ 70844897 (+) False LOC110530467
XM_021613580.2 mRNA downstream 90569 71480964 ~ 71636112 (+) False asic1c
XM_036986125.1 mRNA downstream 192771 71583166 ~ 71631017 (+) False asic1c
XM_036986124.1 mRNA downstream 192771 71583166 ~ 71636112 (+) False asic1c
XM_021613575.2 mRNA downstream 217804 71608199 ~ 71636112 (+) False asic1c
XM_021613578.2 mRNA downstream 217804 71608199 ~ 71640255 (+) False asic1c
TU842479 other upstream 634427 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1722895 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2256055 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2354206 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2402418 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 305207 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 314248 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 314248 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 323333 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1152331 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile