RNA id: XM_036986125.1


Basic Information

Item Value
RNA id XM_036986125.1
length 1623
RNA type mRNA
GC content 0.50
exon number 9
gene id asic1c
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71480964 ~ 71640255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACAACCTCCCTGCCACCAACGGTCTCTCTGAGCTTCACAGGAGCACCAGGAGTTTGTGTACATTAGCAGAAGTTGGAGTTGAATGGAACTGTCTTTTAGAGCTTTCCCAGGCCAACAGAGCAGACATTGTGGTTGTGAAGGAACTCCTACattcaaatcaaaaatcaaatcaaattcgcTACTTGATTTAGGAGGATGGGTTCCccgacagaggaagaagagcagCCCCGGGGGCCCTCTGACATCACggtgttcggggccaactgcacTCTCCACGGCCTCAGCCACATCTTCCTTCCCGGTGGGGTGACCATCCGGCGTCTTCTCTGGTCCATCGCGTTCACCAGCTCCCTGTCTTCCTTCCTCTACCAGGTGGCAGGAATGGTGATGCTGTACTACCAGTACCCCCACGTCACCATCCTGGACGAGATGGACAGCCCTGTCATGCCCTTCCCAGCCATTACTCTCTGTAACTATAACAGCTTCCGTAAGTCCCAGATGACGAGGAACGACCTGTTCTGGATGGCCGGGATGCTCGGCGTGGAGCAGGGAGACTTTGATGACTTCCTGGCTGCACTGGGGACGCCCACAGACAACAGTAAGTTCTTCCCCAGCAAGACATTCAACATGCTGGAGTTTGTGCAGCGGACAAGTCACAACATAGACGAGATGCTGCTCGACTGCAaatacagagggagggagtgcGGTCCGGAGAACTTTACAACGATTTACACGCGGTACGGAAAATGCTACACGTTCAACTCTGGTTTGGATGGCAACCCGATGTTGACAACGTTGAAAGGCGGGACAGGAAATGGGCTGGAGATCATGTTAGATATCCAACAAGATGAATACTTACCTGTTTGGGGAGAGACAGATGAGACCTCGTACGAAGCAGGCATCAAGGTTCAGATTCACAGCCAGGATGAACCTCCCTTCATTGACCAGCTGGGATTTGGTGTGGCCCCTGGTTTTCAAACTTTTGTGTCATGTCAGCAGCAACTGCTTCAGTACCTCCCTCCCCCATGGGGAGACTGCAAGTCCACTCCCATCGACTCTGAGTTCTTCTCCACGTACAGCATCACAGCCTGTCGTATCGACTGCGAGACACGCTACCTGGTGGAGAACTGTAACTGCAGGATGGTCCACATGCCTGGGACCTCAACAGTATGCACACCAGAGCAGTACAAAGACTGTGCAGACCCAGCTTTAGACTTCTTGGTAGAGAAAGACAACgactactgtgtgtgtgagacacccTGCAGCATGACACGCTATGGCAAAGAGCTGTCCATGGTGAAAATACCCAGTAAAGCCTCTGCCAAATATCTGGCCAAGAAATTCAACAAAACTGAACAGTACATCGGAGAAAACTTACTAGTCCTGGACATCTTCTTTGAGGCATTGAATTATGAGAAGATTGAACAGAAGAAGGCGTATGAAATTGCCGGGTTGCTTGGTGACATTGGTGGGCAGATGGGTCTGTTCATTGGAGCCAGTGTTTTAACGATACTGGAAATATTTGACTACTTATATGAGGTATTTAAGGATAAAGTTTTGGGTTACTTCATGCGCAAGAAACGACCGCAGCGTTGTCCAAGCGACAATCTGGTAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843273 lncRNA upstream 21124 71557179 ~ 71562042 (+) True G742802
TU843064 lncRNA upstream 378360 71188546 ~ 71204806 (+) True G742611
TU843062 lncRNA upstream 388520 71189286 ~ 71194646 (+) True G742610
TU843008 lncRNA upstream 456866 71126098 ~ 71126300 (+) True G742567
TU842915 lncRNA upstream 570891 71011860 ~ 71012275 (+) True G742477
TU843329 lncRNA downstream 21466 71652483 ~ 71652835 (+) True G742853
TU843330 lncRNA downstream 22189 71653206 ~ 71653434 (+) True G742854
TU843295 lncRNA downstream 48009 71679026 ~ 71682296 (+) False atg9b
TU843296 lncRNA downstream 49472 71680489 ~ 71682417 (+) False atg9b
TU843297 lncRNA downstream 49472 71680489 ~ 71682296 (+) True atg9b
XM_036986120.1 mRNA upstream 170870 71135382 ~ 71412296 (+) False LOC110530474
XM_036986117.1 mRNA upstream 170870 71261177 ~ 71412296 (+) True LOC110530474
XM_036986118.1 mRNA upstream 192771 71261171 ~ 71390395 (+) False LOC110530474
XM_036986119.1 mRNA upstream 194743 71261167 ~ 71388423 (+) False LOC110530474
XM_036986099.1 mRNA upstream 607852 70936407 ~ 70975314 (+) True LOC110530469
XM_021613582.2 mRNA downstream 28091 71659108 ~ 71682298 (+) False atg9b
XM_036986126.1 mRNA downstream 29046 71660063 ~ 71682298 (+) False atg9b
XR_005052942.1 mRNA downstream 96771 71727788 ~ 71805597 (+) False LOC110530483
XM_036986127.1 mRNA downstream 96771 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA downstream 96771 71727788 ~ 71818121 (+) False LOC110530483
TU842479 other upstream 956422 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 2044890 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2578050 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2676201 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2724413 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 64585 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 73626 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 73626 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 82711 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 911709 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile