RNA id: XM_021613575.2


Basic Information

Item Value
RNA id XM_021613575.2
length 2782
RNA type mRNA
GC content 0.46
exon number 11
gene id asic1c
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71480964 ~ 71640255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATATTCCTGCTGCAAGTCCACAGACAAAAGCATATCTTCCAGCTGAGCAGAAGGGAGGAGTTGATAGCTTTCTAGGCAGCTTGCGCACAAAAGGCACAAACCACTGGAAACTGGGAGAACTATTGTCTCATTGTGGAGATGAAGAGGAAGGtgaagaagaaaaagagagacaacATCTGAGCAACAGGGATACGTGTTTACAGATTTCCTAAGTGACTGATTGCTTCAGGAATTGAACTACATGCCTGCACCTGCAACATAGTATTATCACACCCATCTGTTGATGAGAGACTGGTGTTGGTTATCTTCTCTTtaaaatgtaattacattttttttatttttattaaatcgTGAAGTTATCAAACCTAAGAACTGGACAGCTGAGTCTATCTGGAGCATCGAAAAGGATATTCTTTTTCACTTTTTCCTGGAATTGATGACACCAGTTCAACCAGAAAACCCATTATGATTTTCCAGGAAGCCACTGTATGCAAAATGAAAACCCTAAAGCTTGCCTAAGAAGACTGTATTTTGGCTTGAACCTTACAGGTTGCCTTTGGACAGACATCATGATGTTAACTGCCCCCACATCAGAATTAAACAGCCTGGGGTCTCTACCTAACGATGCCCAGGAAACCACTATCCAGAACAAAAcaggaaggaggaagaagagCATGCTGAAACAGTCATGGATGGAGATCACCATAGCCTTCATGAGGAGGACCAAGGTCCACGGGCTGAAGTTTGTCTTCTCCCCAGACAAGACCTTACCCCAGCGGGTCCTCTGGCTCCTGGCCTTCTTTGTGTGCATGGGTCTCCTGTTCACCTGGTCCTGGAACCGCATCCTCTACCTGATGTCCTACCCGGCCGTCACCAAGATCAAGATGGTGTGGGCTCACAACATGTCCTTCCCGGCCGTGACCTTCTGCAACCACAACCTATTCCGGGTGTCCAGTCTGACCAAGGCTGACCTATACCACAGCGGCTACTGGATGGACCTGATGCATCAGAACCACACGGTCATGGAGAGGAGCCTGGCTCTTCTGAGGGACAACCACAAGTACAGCCTCCTCAACCTGTTGGACTTCAATGGCTACACCCCGTCTCCACATTACCATGTCAACACAACTGAGATGATTGGCAGGCTGGGCCACCAACTGGAGGACATGTTGCTGGAATGCAGGTTTCGGGGGGGGAACTGCACCCATCAGAACTTCACCACTATTTACACGCGGTACGGAAAATGCTACACGTTCAACTCTGGTTTGGATGGCAACCCGATGTTGACAACGTTGAAAGGCGGGACAGGAAATGGGCTGGAGATCATGTTAGATATCCAACAAGATGAATACTTACCTGTTTGGGGAGAGACAGATGAGACCTCGTACGAAGCAGGCATCAAGGTTCAGATTCACAGCCAGGATGAACCTCCCTTCATTGACCAGCTGGGATTTGGTGTGGCCCCTGGTTTTCAAACTTTTGTGTCATGTCAGCAGCAACTGCTTCAGTACCTCCCTCCCCCATGGGGAGACTGCAAGTCCACTCCCATCGACTCTGAGTTCTTCTCCACGTACAGCATCACAGCCTGTCGTATCGACTGCGAGACACGCTACCTGGTGGAGAACTGTAACTGCAGGATGGTCCACATGCCTGGGACCTCAACAGTATGCACACCAGAGCAGTACAAAGACTGTGCAGACCCAGCTTTAGACTTCTTGGTAGAGAAAGACAACgactactgtgtgtgtgagacacccTGCAGCATGACACGCTATGGCAAAGAGCTGTCCATGGTGAAAATACCCAGTAAAGCCTCTGCCAAATATCTGGCCAAGAAATTCAACAAAACTGAACAGTACATCGGAGAAAACTTACTAGTCCTGGACATCTTCTTTGAGGCATTGAATTATGAGAAGATTGAACAGAAGAAGGCGTATGAAATTGCCGGGTTGCTTGGTGACATTGGTGGGCAGATGGGTCTGTTCATTGGAGCCAGTGTTTTAACGATACTGGAAATATTTGACTACTTATATGAGGTATTTAAGGATAAAGTTTTGGGTTACTTCATGCGCAAGAAACGACCGCAGCGTTGTCCAAGCGACAATCTGGAGTTTCCAGAGAACCCAACCAGCCCTGGTGTCACGCCTAATCATGCCCCCAGAGCACCTGTGACACCCTCCGGAGTCACTCGGACAGTCTCGGATTCACGCCGAACATGTTACCTCGTCACCCGACTCTAGGCAACTTTGAGGAGTTTGCTTGTTGACGACATAAAGcagggggggggcgggggggctcTTGGGATATTCGGGGTTTGACagaaaactgtgaaataacatgtATTATTACAAACATGGTTAGTGTAGAGTAGTAGGATCTAGCGATTGCCTGaatagaaatagaacactatcaTAAGAATAAAACCATTTCCAAAGCAGAACTCAGGTGACGGACATATCAAGGCGTCGACGACACTATTTATTTGATGTTCCATTCATGTTGCATTCTATTAAACAGGGTGACATTAGTGTGACATTAGTGTGTCAGCCTAGTAATGTATAAGACTAGTAATGTATAAGACTTGTAATGTAGATGGAAAGGACTTCAGAGTGGTCTCAGTTCATGTCAACTTATTTAAACCATTGTAAAatactcaacaaaaatataaacgcaacatgcagcaatttcaaagattttcctgagttacagttcatagaaggaaattagtcaattggaATATATGAattaggccccaatctatggatatcacatgactggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843273 lncRNA upstream 46157 71557179 ~ 71562042 (+) True G742802
TU843064 lncRNA upstream 403393 71188546 ~ 71204806 (+) True G742611
TU843062 lncRNA upstream 413553 71189286 ~ 71194646 (+) True G742610
TU843008 lncRNA upstream 481899 71126098 ~ 71126300 (+) True G742567
TU842915 lncRNA upstream 595924 71011860 ~ 71012275 (+) True G742477
TU843329 lncRNA downstream 16371 71652483 ~ 71652835 (+) True G742853
TU843330 lncRNA downstream 17094 71653206 ~ 71653434 (+) True G742854
TU843295 lncRNA downstream 42914 71679026 ~ 71682296 (+) False atg9b
TU843296 lncRNA downstream 44377 71680489 ~ 71682417 (+) False atg9b
TU843297 lncRNA downstream 44377 71680489 ~ 71682296 (+) True atg9b
XM_036986120.1 mRNA upstream 195903 71135382 ~ 71412296 (+) False LOC110530474
XM_036986117.1 mRNA upstream 195903 71261177 ~ 71412296 (+) True LOC110530474
XM_036986118.1 mRNA upstream 217804 71261171 ~ 71390395 (+) False LOC110530474
XM_036986119.1 mRNA upstream 219776 71261167 ~ 71388423 (+) False LOC110530474
XM_036986099.1 mRNA upstream 632885 70936407 ~ 70975314 (+) True LOC110530469
XM_021613582.2 mRNA downstream 22996 71659108 ~ 71682298 (+) False atg9b
XM_036986126.1 mRNA downstream 23951 71660063 ~ 71682298 (+) False atg9b
XR_005052942.1 mRNA downstream 91676 71727788 ~ 71805597 (+) False LOC110530483
XM_036986127.1 mRNA downstream 91676 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA downstream 91676 71727788 ~ 71818121 (+) False LOC110530483
TU842479 other upstream 981455 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 2069923 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2603083 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2701234 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2749446 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 59490 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 68531 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 68531 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 77616 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 906614 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile