RNA id: XM_036986126.1


Basic Information

Item Value
RNA id XM_036986126.1
length 6113
RNA type mRNA
GC content 0.45
exon number 14
gene id atg9b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71659108 ~ 71682417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTTACCAGGAGTACCAGCGGATTGATGACTTTGAGGAGGACTCACCTCCCGGGGAGGAGGACCTATTAGTGCATGTGCCAGAGGGCCTGAGTggtactgtactggttatattATAACACTCATGGCACCATATCAAGAATCTGGACAACTTCTTTACAAGAATCTATCAGTTTCATCAGAAAAATGGCTTTGCTTGTATGATGTTATCAGAGTTCTTTGAACTTTTTCAGTTCCTGTTTGTGGTCACTTTCACAACATTCCTCTTCAACTGTGTGGAGTATGATATACTGTTTGCCAACCGGGCAGTGAACCACACAGGACCTGGCCAGAACCCCCTGGACAGGAACAAGGTCTCTCTGCCTGATGCCATCCTACCAAGCCAGCAGTGCACTGAGAGGATCCAGGAGAATAGTTGGATCATCTTCCTGCTCATCATGGCGACCATCTTCTGGGTCTACCGGATGATCAAGGTCTTCTGCAACATCCTCAGCTACTGGGAGATACGCCAGTTCTACATCAAAGCACTGAAGATCAGCATGGACGAGCTGTGTAACTTCACATGGCAGGAGGTCCAGGACCGTCTGATCAGCCTGCAGCGGGAGCAGCAGATGTGTATCCACAAGAAGGAGCTAACTGAGCTGGACATCTACCACCGCATCCTGCGATTCAAGAACTACATGGTGGCCATGGTCAATAAGTCACTGTTACCTGTACAGCTTCAGCTCCCCCTTCTGGGAAACCTGGTGTTCCTCACCCAGGGCCTCAAGTACAACTTTGAGCTGATTCTCTTCTGGGGTCCGGGGTCGCTGTTCCAGAACAAATGGAACCTGCACCCCAAGTACAAGCGAGCAGGGAACCGTCTGGAGCTGGCCCAGCAGCTGAGCCGGGTCATTCTTCTACTAGGCGTGGCCAACCTGCTCCTCTGCCCCTTCATCCTGGTGTGGCAGGTGCTCTATGCCTTCTTCAGCTACACCGAGGTCATCAGGAGGGAGCCAGGGAGTCTGGGAGCACGCCGCTGGTCTATGTTCGGCCGCCTCTACCTGCGCCACTTCAATGAGCTGGACCACGAGCTGCACGGCAGGCTAGGCCGCGGCTACAAGCCCATCTCCAAGTACATGAACTCGTTCACCTCGCCGCTCCTCACCGTGCTGGCCAAGAACGTGGCGTTCTTCTCGGGCTCGGTGCTGGCCGTGCTCATCGCACTGACCGTGTATGATGAGGATGTCTTGACTGTGCAGCACATCCTGACCGCCATCACCGTGCTGGGAGTGGTTATCACCATCACCAGGTCCTTCATCCCAGACGAACACATGGTGTGGTGCCCGGAGCAGTTGCTGCAGTGTGTGCTTGCTCACATCCACTACATGCCAGACCACTGGAGGGGCAACGCCAACAAGAGCGAGACCCGGGACGAGGTGGCACAGCTGTTCCAGTACAAAGCGctGTTTATCCTGGAGGAGCTGCTGAGCCCCATCGTCACGCCCTTCATTCTCATCTTCCTCCTGAGGAACAAGTCCCTGGACATCATCGACTTCTTCAGGAACTTCACTGTGGAGGTAGTTGGGGTCGGAGACATCTGCTCCTTCGCACAGATGGACATCCGTCGTCATGGAAACCCTCTGTGGATGTCTGAGGGCCAGACGGAGGCGTCTGTGTACCAGCAGGCTGAGAACGGCAAGACTGAGCTGTCTCTGATGCACTTCACCATCAAGAACCCCCGTTGGCAGCCCCCCCAGGAGAGCTCAGTGTTCATCAGCCATCTGAAGGAGAAGGTGCACCAGGATGCCCAGGGAGGACCCCCCACCCAGCTGCTGCTCTCTGAGGCCCCGCTCTGCTCCTCACTGCTCTCCAACGGGTCCGGCAATGAACCTGACAACCTATTGGCAAGTGTCCTGGCCCACCCTGTGCTGACCGCGTCAGGCCTACCAGGCCGAGACCGCCGCTTTGTTCCTCCCAGCACGGCTGCCTCTGCAGCCGCCAGCGTCCTGGCCTCGCTATCCAACTCCCACTCTCAGCTCCCCCACGCCAGCCGCTCCCGCTCGCATGTCCATCTGCCTTCCACCCACCCCGACAGCACCATGTACTGCAGTGACCGCACCATCATCGACAGCATGTCAGCCAGTGATTCTCGAATGAAGAGCACTACATTGCTATCAGAGTTTGCCTCGGCTGAGATGAGTCTCCATGCTATTTACATGCATGAGGTCCACCAACAGAACTCGCTCCCCCACCAGAGGACAATCGGCCAGTGGCAGAACCCAGTGCCAATGAGAGAGCTAAGCAGCAACGCTGGTTCTCAGACGCACAGCGTCCACACAGCAGTCAGCCTGTCTAATATGCCCACCCCGCTGCGTCTGGGAGGCTGgacggaggaagaggagggggatgcaGAGGAAGAGGAAATCCTCAACAGTGGGTCGACTCCTAAACAGGACTCTAGGAGTAGCTATTGAAGTGCCTTAAATAAATGGTGTTTACACTTTCCTTTCTGGATGAACATTGTGGCCTTAGATGATCTTTTTGGAGTATAGGATAGATAGGACCTTTATGACGTCACACAGCACAGGCAGCTGGGGAACTCATTGGATAACCACTGTCTCCAtgcctctcctcctatcacatCAGGAGGTTTTGTCGTCAGGGAAACCAACTGTATGTCTTCCGTCCCTCTCCATGTCATTGTTTTGTTATAGAATGTATTTACATCGCtcatagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgcgcACGCTTTGGGACTCTGGGAAAGAGTGGCATGCACAGCTAGGACACTTGCAAGGCAGGCTTGAGCATGGTACGCAGCAAAACCTGTCACACTTTTGTTGcatattcatgttttttttaatataataTAAGTTTGATTTGTGCATTTGGGAGGTTTACAATATGGGTCTGGGTTCACTTTCTCATGGTGGAAATGGTGTCTTTCCTGGTGCTGAAGAGACTGGAGTGAAGGTGTATCATACTAGCTGCCTGACCATTTTCACTATATGATGAAAGTTAAGTGCAAAATTCTACATTGGCATATTTGGCCCTTACTTATTGCTTGACATTTGTAAATACACTTTAGCGTCTTACATCTATATGAATATTTAAGATTTGTTGTTTTTAGTCCTTGGGGCAGTTTTAATCATTGGGGAAGATGGAAAAGTACTGAAAACAGTGACATGAAGCAGGCTGCAactatactactgctactacagataGGACCCCACTAGAAAATATGACAAAAGCCTACAGATGCGCTAGATTAATTAACCACAATTGTAAACAGGATAAAATCTCATTAAAAGCTGCTGTCTGATTTAAATGGGCCTAATATTATTCTCTTTCTTTAAAATCCTGGGTGACTCTAAGACAGGATTCAACATATAATAACTTGATTATTTTGTATCAAAGTATCTTCCATGTACAGTCTCCACTGGCAACAGGGGTGTTATACTTGACAAAGGTACATACATCAAGATTACATATTTGCAGAGACAGTAACTACATTGTTGTGGGTAGGTATGAGAATAAGCTATGGAGGGTTGCATATTATGTACAGTAAATTAAGAAGTGTTGTTGAATACATTGATTTTGCATGTACTGCTCAACATTTTGTTTACAAAACACTTTCCCCTATGTACACACAAGTGaactttattattattttgcAATTACAGCAATCAGATCTTGAGGCTTAAACCggttggttttctgttctacctgatagtTAATTGCACTCACTTGGTGTCCACGGTCTAAattagtccctgattagagggtacaatgaaaaaatgcagtggaactaaCTTCGAAATCCAGAGTTGAGATTGAGGGTTATAGAGGATGAtgtgagctggccaatcagcggtctactcacattaatatttttaatgaccggtatacacccacaccattctgtttttggggtatgcccacaccattctgttgttggggtatgcccacaccattctgttgtattgggtatgcccacaccattccaacacagaataGCATTCTTTTTATAAAAATAATTGTACATTCTTCATTCAAAAACTGTGGAAGGAAAAcaactatttcactcatattggtATTCATTAtatgtcatatttcatagaaatctggtaACTGGATAGTTACTTTAATATATTTCATTTAGTATTTATTGTTGAAAAATCATCTTTATAGTAAATACATTCATACCAAATATGATTGGGATCTAATGTTAATAACTGAACGTCTTAACAGAAATCTTGAAGGCACCCATGTAAATCTAACTTGTTTTCCTTAATGTATGTCTCATACAACATTGAACAAAactgattttaaaaaatatatatttttgttgaatTGCCTTTGACAAAACATAAAGTAACTATCCATATGCAACTTTGAAATGAAACAATCCTTCATGTTGCTGGTGTCATCAGTACAGTACAACTCAAAGGAGGGCACACTTGTCTGCATGTAAATGCTGAATGTAACCCAGCCATCATCCCATGAAATACGTGGCATGATGTATCATTGGTACTGTAGCCAGAACAGTTTATTGAAACATTATACTAAAGCTCCATTACTGCTACTGTATCCATGTCCCACTGATACAATAACCTAGTCCACACCTATACGTATATCTCTGTATCCTCtacaacattttagtcatttagcagctgctcttatctagagcgacttacagtagtgagtgtatacatttttgttttggtCCCCcggtgggaatcaaacccacaaccctggcattgcaagcaccatgctctaccaactcagCCAAACAGGACCACTATTGTAAGACTAGAGAGTATATGTGTTTGATGACTTTTTCCCTTCATTTAGTTTTTTTCATTTGTGTTTTGAAGTGGTGTGGATGTAGACATCAACCTAACTATGCTAAGCTAACGTTGACTCAAAAGTTTTGCActgattgaaaataaaaattataTTGCTAGAGACCTGCATCAAACTATATTTTCGATCCAGCCGAGGTCTCAAAGGAACAGTGAGTGGAACTCCCTTCCTGAATGGCCTCTCTCACTATATATAATAACCATATGTAGGATTGTTATCATCCATACCGTGGGCCTATCACAGACCTGGTTGTTGTTACCTCTGGTCAGCAAAAGTTCACCAATTAGTGGGGAATGTCTGTCAATGTTTTAAGTAACATTATAGGCCTAGTCAATGCCACATATGGTATTGCTGTTGGTGTTCCATTTGTTTTACTGATGTAATAAGTTTTAGGGGAGATGTGGTAGTTCATGAGTCTTGCCAGTTTCCATAGCCTAGATTGCACTGCCTCTCCCtatctttttttatttgattattttgcTTTATTTTGAGCAGTGCCTTAGGGTTAGCTTTAGTTCATATTAGAAACCATTGAAACCGTCAGAGCTCATTTTACTTTGTATTTTAGCAGCACATAATGTACAGTATTTCTTTTGGCAGGATTGTCATGTTTTGGCACCAAGTATACAGTGGGACTTGTATTCTAATATTGTTGATGAGTCCTGAGTAACATGAACTACAACAGACTGATATTTGACATAAAAGTAGTCAAATCACTTTCACCTGATGACAGAATTAATCTGATCAAAGTGTTTCGTTCTGTACTGTCTGCCTCCCCAGTCCAAAATAATCAGTTGGGGAGGGGAAATGTTCTATACCCTTTTCATTTATGTTTAATTATTATTTAATTCCATCCTTGAGGCTCCCCATTCAATATCATTGCTTCTTATCCACTACAAACCAGTCTCCcccaaaaaaacatgttgactggTACAAGGTGCTACGTTTTCATATTCTTAGTGTTGAATAGATTTTGAGCCATCTATTCTTTGTTGCTTAGGTTTgttctttttgtttgttttgtttaatttaAGAAACACTAGCTGAGAATGAACAATGCCAAAATAACTTGTTTTCAGCAAAGCTTTATCATAcacattttatttgttttctGTAACTGAATAGGCAAAGTAATTCTTATTGTGTGTATTTAATCATTAAAGTGTGTCCCAAATTCTAATGTACTTGATttgaaataaaacatgtaatatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843330 lncRNA upstream 6629 71653206 ~ 71653434 (+) True G742854
TU843329 lncRNA upstream 7228 71652483 ~ 71652835 (+) True G742853
TU843215 lncRNA upstream 21713 71580417 ~ 71638350 (+) True G742748
TU843273 lncRNA upstream 98021 71557179 ~ 71562042 (+) True G742802
TU843062 lncRNA upstream 465417 71189286 ~ 71194646 (+) True G742610
TU843341 lncRNA downstream 24005 71706303 ~ 71715616 (+) False G742860
TU843014 lncRNA downstream 151329 71833627 ~ 71837764 (+) True G742573
TU843397 lncRNA downstream 161493 71843791 ~ 71844084 (+) True G742904
TU843460 lncRNA downstream 250229 71932527 ~ 71934937 (+) True wnt9a
TU844189 lncRNA downstream 255133 71937431 ~ 71937872 (+) True G743613
XM_021613578.2 mRNA upstream 19808 71608199 ~ 71640255 (+) False asic1c
XM_021613580.2 mRNA upstream 23951 71480964 ~ 71636112 (+) False asic1c
XR_005052942.1 mRNA downstream 45490 71727788 ~ 71805597 (+) False LOC110530483
XM_036986127.1 mRNA downstream 45490 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA downstream 45490 71727788 ~ 71818121 (+) False LOC110530483
XM_036986129.1 mRNA downstream 45490 71727788 ~ 71818121 (+) False LOC110530483
XM_036986130.1 mRNA downstream 45490 71727788 ~ 71818121 (+) False LOC110530483
TU842479 other upstream 1033319 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 2121787 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2654947 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2753098 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2801310 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 13304 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 22345 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 22345 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 31430 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 860428 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile