RNA id: XM_021613613.2


Basic Information

Item Value
RNA id XM_021613613.2
length 3753
RNA type mRNA
GC content 0.46
exon number 4
gene id wnt9a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71907559 ~ 71934937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATGGGAGGAGCGCAAATGTCCTCTCTCTATAAGAAGTGCCGAACGTACAACAAGGGATTTTATACAGCTACTCAGGAGAAACGAAATGATCTGCCCTGGAGCCGCAGCAAAATGCTGGATGGACACCTACTCCTGGGATGGTTATCGTTCACAGTTATAGTGTACCTTTTCAATTTGCCCGGACCGACAACAGCTTATTTCGGACTGACAGGTAATGAACCCCTGTCCATCCTACCGCTGAGCTCCCAACCCGAGGAGAACGTGGGCAGGGCCCACTACAAGCTGTGCGACCGGCTCAAACTGGAGAAAAAGCAGAGGCGGATGTGTCGACGAGACCCGGGTGTGGCCGAGACCCTCATGGAGGCCATCAGCATGAGCGCCCTGGAGTGCCAGTACCAGTTCCGCTTCGAGAGGTGGAACTGCTCTTTAGAGGGCCGCTACAGAGCCAACATTTTAAAGAGAGgTTTTAAGGAGACAGCCTTCCTGTATGCCGTCTCCTCAGCAGGCTTGACTCACGCCATGGCCAAGGCGTGTAGCGCCGGGCGGATGGAGCGTTGCACCTGTGATGAAGCACCAGACCTGGAGAACCGCAAGGCCTGGCAGTGGGGCGGCTGTGGAGACAACCTGAAGTACAGCAACAAGTTTGTCAAGGACTTCCTGGGCAAACGCTCCAACAAGGACCTGCGTGCCCGCGTGGACATGCACAACACTAATGTGGGCATGAAGGTGATCAAAGCCGGGGTAGAGACTACCTGCAAATGTCATGGCGTCTCAGGCTCCTGCACCGTCCAGACATGCTGGAGGCAGCTCTCGCCCTTCCATGAGATCGGCAAGCAGCTGAAACAGCGCTACGAGGCCTCTCTGAAGGTGGGCAGCTCCACCAACGAGGCCACGGGGGAGGGGGAAATCTCCCAGGCCCGGCCCCAGCAGCAGCCCTTACCAGGCCCCAGCAATGACCCAATCCCACGCACCATGGACCTGCTCCACATCGAGGACTCGCCCAGCTTCTGCCGGCCCAGCAAGTACTCGCCAGGCACCTCGGCCAGGAAGTGCTACAAGGACAAGAACTGCGATGCCATCTGCTGCGGCAGGGGCCACAATACCCAGAGCCGCGTGGTGACCCGGCCATGCCAGTGTCAGGTGCGCTGGTGCTGCTACGTCGAATGCAAGCAGTGCACGCAGAGAGAGGAGGTCTACACCTGTAAAGGGTAGGCCAGTCTTagaggagagagcaagacaaTGGAGTTGGAGGACCTTTATAAGCACTTTGAGGGATTTTCTGTCGTGTGGGTTTGGTTCTAATGCCCTGTGGCCCCAGCCAATGGGGGTTGGGGTTGCAGCAGGAGATTGGCCATGTCTGACAACCGGGTCAACACGTGTCTCATGCTTTCTGGTTGCAGAGTTAGAGCCTTGGATAAAGGCTACCTCGCCTATTCAACATCCAGTCAGATGTGTCAGTGAGAAAACGCAGCACTTGGCAGCTGTCTCCGGCTAGCATGCTGTTAATGAGGATCCAATAGAATGACTGTAATGGTAAAAGACTGGCTTTTGGGCCTTGCCCAATGTAGAAATGTGTGTGTTGGCGGCGAGTGAGGGTGCAGGGGAGTCAAATGACAACTCATATGGCAATCATGGCAACCATATTCTGAAACTGTTAAGAAGACAGGGTGTAAGATTTATTATACGCACACATATTTACACTCGCACACCAATGTGTGTATGCATATGTATGTAAATAAATTAAATTGTATTATAATGATATTATATACACTTGCCACTTCTCTGAATATGTTTAAACAAACCACTAACTacacaaatgtattgttgttTGTGTGTTCTCGCTCTCTTTTGCTTTATAATTTCTTTTGACAAGGCCCTTTGGAAAGCAGCACATTTGTGTCCTTTGTGTCTCTCTGTGGATCATTTATGGACCCTTTGGGACTACTCCTTCCCGAGGAGAGGAAACACGCTCATTTGTCTTTGATTCTTTTTCGCTAGAGTGAAATTGTTGGTGAATACATTTCTGAGTAcagaaattatatattttttgccagTAATTTTAGGCTACTTTTGGGCGAACTCAACTAATGTTCAGGGAATAACTGAAACCACTATACTTATTTAGAAAGAGTAAAAAGAAAAACTGAAAATCTGCATGTAATTGAAAGTTCAATGAGAGAATGGCCTTGCTTTTCTGAGTCTAGTGTCTATTACTGTCACCATGACAACAGGAGACCGACCACTTGACCAATAGAGAATGCATCTTCCAATCAGCTGACTAATGCTCTAAGTAATAGTAACCCAACTATGTCACCTTGCTTCTTGGTACTTAGTTAGCACTCTGTTTAAAAAGGAAAAGCCAATCTTGCTAGTAATACTACTATAAAGTAAAGAAAACAGCAAACTATGGGTACAGGAGAAATGTAACCCCTATTTCTATACATACACTCTCatatccttccttcctctctctagaGTGCACCATTTGATTGACAAGGATAAATGGTTGAGGTTGAAAATGAACAGTATGATGCTATGGAAACTAAAATCCATCTTGACATGTCTGCAAAATGGCTTCAAAATTAACACCCTGAGGCAAATGCGGTCTTTTACAGATAGTCCTGCTGAAGCTTAAGGTGTATTATGGTGACAAAATGTGTTTGCGACAACAAAGCAAATGTATGCTCTAGCTGTAGCCTATGCATTTTCTATCCATTGTTTGGGGCATAGCTAACAGAACTCCGTGACTGCAAAGGTACAATCTCCCTTTGTGTTGTTTTGACAGTAATTTTCTTTAAGGCAGGTTACCATTATGTTGTACAGTAAGATTTGTATGACTAACATTTAATATTGACTGGTGGCAAAGGCAGAGCCAACCCTGTAAACAGCTACAATAACTCGTCAGATGCAAAGTCATCTTTAGATTCCCTTTAGGTATACCGTCTTTGCCTTGTTTTAAGTGGGTGAGAATGAACTACTGAGTGAGGAACCCAACATTGTAAGATAGCCCCATTTACGCACTGAAGCCCCAGAAGCCCTTTATAATTTCCCTTTAAAGTATTTAAAGACCTTGTATTtatgaatatatacagtgcagATGTTTTTGTTTATTGTAAAAAGCAGTGGTTTATTCTCCTGTGGTATAGAGACAAGAATGAGGCACATGGTACAATCTCACAGACAATTAAAGAGGAAGTTGGTAGCAATAAGGAGGTTAGGACCAAGACATTTGATGCTGGGAAGGCAAgtggtaaaatataaaatataaggCTAAACCATGAATATGGAATACAATGCTGCTGTAAACTTTTGATTGTAAGTGATCATCAGTAAGTGAAAAACAAGTGCCAAACGAGTACCAAGTAAATAGCATGCCAATACCCTCGAAAATAGCTTTGACCACCGACTATGATAGATAGACTACAGTTCGCCCACAGTTTTAAATCAGTGACGCTCACAGGATTTCTATCTGATTTGACCCACCATGATTTATCCAGAAAAGGCAGCATGCTCTCAGAAGGGAGTCTAGCCTAACGAAGGTTGGTTGGTTCATCCTCTAGAGCTGAATTCCAAACATTTTGAAAATGAGCAGTCATGCCAAATAAagaatggtcaaaacatatacatAGAACTTTGCACGCTACATGGAAACCATAATGGCTCTGCTGAAAACCTGAGCATAAATGCCTGCTTCCCACAGCTTCCACACTCCCCTGCCCAAGACTGTGGTTCTCTACAGTGGTCATTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843397 lncRNA upstream 63475 71843791 ~ 71844084 (+) True G742904
TU843014 lncRNA upstream 69795 71833627 ~ 71837764 (+) True G742573
TU843341 lncRNA upstream 191943 71706303 ~ 71715616 (+) False G742860
TU843296 lncRNA upstream 225142 71680489 ~ 71682417 (+) False atg9b
TU843295 lncRNA upstream 225263 71679026 ~ 71682296 (+) False atg9b
TU844189 lncRNA downstream 3570 71937431 ~ 71937872 (+) True G743613
TU844206 lncRNA downstream 13830 71947691 ~ 71947980 (+) True G743630
TU844207 lncRNA downstream 14551 71948412 ~ 71948695 (+) True G743631
TU844209 lncRNA downstream 15222 71949083 ~ 71949294 (+) True G743633
TU844223 lncRNA downstream 25733 71959594 ~ 71960167 (+) True G743647
XM_021613612.2 mRNA upstream 75003 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986142.1 mRNA upstream 89438 71727788 ~ 71818121 (+) False LOC110530483
XM_036986150.1 mRNA downstream 163531 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA downstream 163531 72097392 ~ 72102520 (+) False LOC110530489
XM_021613631.2 mRNA downstream 212492 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 217453 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA downstream 218049 72151910 ~ 72155430 (+) False LOC110530494
TU843344 other upstream 191943 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 191943 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 191943 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 201017 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1280815 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 608865 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 608865 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 608865 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 617515 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 701023 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile