RNA id: TU844382


Basic Information

Item Value
RNA id TU844382
length 2355
lncRNA type read_through
GC content 0.44
exon number 3
gene id LOC110530489
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72097392 ~ 72103866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATATCATTGCCATAGCATGTAAAATAGAAAGCTATTTGTAGGTTCGAATAAACGAACCAGACCCTCCTAATTTTCGACTTATCTTTGTAATGCAAATCCCAAAATTATGTAGTTATATCGTAGATACGTCGCCAGTTTTAATCGCTTGCTAACTAGTTAGCTATATCCAGGATTTGTTTATATTATTGAATATCATGGACAGGGAGTCTTACTATAACTGCTGCAGCCTTGTCAAAATACCAAGGCAATCCTATGAAAAATTCTGGTCTTCGCACTTTGTGGATTACATAGACAAGGAGTTGAGCTATTCCAAATTCTTTAAAAAGGTACTTACTTCCCAACCACCCATTCATGTTCTCGAGGAAATTCACTAGACTGGACATGCAGAAAACAGTGGATCACTGAAGAGGGGAAACCAACCTTCCAGAAACTGCTGCAGCAATTTGGAGCCAAGGGGCCAAGGAGAGTTTCTACAAGACAGCCATGGCAACCTTGCTTATGACATCACTACCCCCGAGCTTCAAGACAATGGGCAGTTCCCACACTCTGTTGAGGCCTGCCAACCACTAGAGATCATTCAGGAAGCGGGTGAGATCATTTGTGTGCTCAGTGGTTGGCACCATCAGGTTTATAATTTGGTCATCATGAAGTCTTGCTCTGGGATTGACTACAGGGAGTTTGCCTCTTTCCAAAAGATCATCGCTGACAACCGCATGTCTTTCTTGAGCTCTTGAAACACCTCAAATTACCCTCTGCATCTTTCAAATACCCTGACCACGTTAGGACCTCACCACGCTGCCTGTGACCTGCAGAGGATGGCTCACATTCTAGAATGCATGCTCTGCAATTACTTTAACTGGAACATTCAACTCTGAGCTCacacaacacccacccgtagatcgcactccagcaggtatatctcactggtcaccccaaagcctattcttcctttggccgcctttccttccagttctctgctgccaatgattggaacaaactgcaaaaataactgaagctggagactcatatctccatcactagctttaagcaccagctgtcagagcagctccccatactgtatttatatattttcctcctttgcaccccagtatctctacttgcacattcatcttctgcacatctaccattccggTGTTTAATTGCTagattgtaattacttcgccaccatggccaatttattgccttacctcccttatcctacctcatttgcacacactgtatatatacttttactgtactattgactgtatttttgtttattccatgtgtaactgtgttgttgtatgtgtcaaactgctttatgttggccaggttgcagttgtaaatgagaacttgttcaactagcctacctggttaaataaaggtgaaatttaaaaaactgAAAGTTTTCTGGAGTAGATTAAAGAAACCAAACTCCACTAGAGGGCAGCACTCCCTTTACCAGGAGTAGGCCACTGTATCCCTTTCTGAGCATCTTTATCTATACATTTGGTTGATAAGGCTTTGGTTTCAGAGATAGGTAGCCCAAATGACTTGCCTGATGTCTTGAAATACATACGTTTATGGATGTTTTGTGTGAATGAGATGTTgagaaaatgagaaacatccaTACTTTGTGTCCTTATATGTTTATTACACCAGAGATGCATAGTAATATTTATGACAATAGCTAGTAAATTATGGTGCACAACTGGCAAACAGCATAGTTAAGGAAGATAGACTCTGAAATTATAATTTCAGAGTCTATCTAAAGCAATTTCAATATTGCAAACAAAGTAAAACTATTGTCAGACATGGCTGCTAGTGGTACCAGTGAAATACTGTATTAGATGAATTTGGAAAGAGAAGATGTAACTATGGACGTGTAGAAATCCATGAAGAAATTATATGGCTCTTTTGAACAAATGTACGTTTCATATTGTTGGGGTCAATAAATACTTCTATCCTCATTTTGCTTTCGTGTCTTTGGGCCACCAGTCTGGCACGGAGGCCTCTAGAGTCACTGTGGTGTCCTCTGACGCCTTGAGTGTCAGTGGCTCTTTAGCGTGAGCCAGGCGGATCAGGCTCAGGCCCAGCTCTCCAACCCCGGCCCTGTGCTTCCCGGCTGGCTTGCCAGACTGGGTCTGTAGCGATACTCCTTCCTCCAGGCCTTCGGCTGGTGCTGACATGCGTACAGGCATCAGGCGCTTCCGCACCACCCCGGTGTGATGAGTCCTGGCGGTCAACTCCTGGCCAATGTAACAGCCCTTACTGAAGCTGATGCCCTGCATGTAGACCAGGTTGGACTCCAGAGGAAGAGCCACCCCGGGAGGAAGGTCCTTCACCCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844365 lncRNA upstream 16510 72080737 ~ 72081135 (+) True G743787
TU844357 lncRNA upstream 17852 72069953 ~ 72079793 (+) True G743779
TU844322 lncRNA upstream 20782 72030412 ~ 72076863 (+) True G743745
TU844294 lncRNA upstream 81801 72011141 ~ 72015844 (+) True G743718
TU844264 lncRNA upstream 111108 71986323 ~ 71986537 (+) True G743688
TU844369 lncRNA downstream 35113 72138979 ~ 72139484 (+) True G743791
TU844402 lncRNA downstream 36465 72140331 ~ 72140976 (+) False G743813
TU844400 lncRNA downstream 36710 72140576 ~ 72140976 (+) False G743813
TU844403 lncRNA downstream 36868 72140734 ~ 72140976 (+) True G743813
TU844407 lncRNA downstream 39717 72143583 ~ 72143878 (+) True G743815
XM_021613613.2 mRNA upstream 163784 71907559 ~ 71933861 (+) False wnt9a
XM_021613612.2 mRNA upstream 265089 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986144.1 mRNA upstream 279524 71727788 ~ 71818121 (+) False LOC110530483
XM_021613631.2 mRNA downstream 42487 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 47448 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA downstream 48044 72151910 ~ 72155430 (+) False LOC110530494
XM_021611273.2 mRNA downstream 87301 72191167 ~ 72219447 (+) True LOC110529137
XM_021613635.2 mRNA downstream 237630 72341496 ~ 72345654 (+) True LOC110530496
TU843344 other upstream 382029 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 382029 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 382029 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 391103 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1470901 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 438860 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 438860 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 438860 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 447510 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 531018 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile