RNA id: TU844408


Basic Information

Item Value
RNA id TU844408
length 2094
lncRNA type sense_over
GC content 0.37
exon number 4
gene id LOC110530494
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72146353 ~ 72155430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCTGTTTGAGTAGCTCGATGTAAGGACAGCGCGTTGTCTATTTGGTGTGTAGCGCATACATAATCAGTCCGGATCCATTATCTTCAATAGAAGTTTGACAAAACGCCAAGATGTCTGCATATGATGAAGAAGAATCTAAGTTTATGCGAAAGGTGAAGGAGAATCCTTTTGTCCCAATAGgaatgGCAGGATTCTTTTCCATTGTGGGCTACAGACTTTACAAGTTGAAGAGCCGTGGAGACATGAAGATGTCAGTGCACCTTATCCACATGCGTGTTATGGCCCAAGGATTCGTGGTGGGAGCTATGACTATTGGTGTCATTTATTCCATGTACAAAGACTACATTGTGAAGCCAAGAGAAGAACTGAAGGCATTGCAACAGCAGACTGCATTTCAACACAAATAACCTGATAAATGAATATGGACTCTTTTGGATTGATATTTTGTATGTCCCCTTAATATTACCTCAGTTTGCCATAAATTGTATATCTACACCTTTCCCACATATAACACACCTGTTAATGTACTAGGTAGTTTTAAGGAATTCTCACTCACCAAGAATGTCTACTGCACTCTTTTTAGACGAAGATGCCATGCCTTACCTCAACTCAGTTTTGAGTCTCCATATCCTCaaaatgtgtgtgtttcctgaGGGTTGTCACTTTGATGAGACATAGATATGAGCCAACTGTAACTACCTGAGATGGTATTGCATCTTAGTGACACACAAAACATGACGTATGAGATTATTGTGAATGCAAGTCTGTTGAAGGTACGTGGTTGACTAGAGGACAATTGGTAATGGAAACTCACAttctaaaaaaacattttttagattTTAGGAGAACAATATTTTGGGATAGGTCACAGGATGTTGTATGAAATATTTATTGGATGTTAGTTACATCTGGTTATCAAATGAGGAGCAAACAGCCATTTGATGCTATAAAACGGGTACTCTTACCCTACGAGATCCGAAGCCTGCTGGTTCTATTCTACCTGACAATTAATTGCATGCACCTATTGTCCCAGCCTCTGATTAAAGGGGAACAATTAAAAAATACAGTGAAACTGGCTTTGAGTTTGAGGGCTATATAACATGCTCTGGATCAGCAAAGGATATTGGGTAGTTTGAGTTGAAGTGACTGTGTTGGTACAAGACAGCCAGCTGTTATTAGGACACAGGTCTTGCTCAACCACCACTATTCCAATCGTCACTGAATGCTTTTCTGGATTTCCTTTGAAGggtattttattgtatttgttttattttattggtTGATTATTACATTATTTAGATTCACTCTATTATTAAAGCTGCGATGTGTAACTTTTTGAGTGACCTgacaaaattcacatagaaatgtgagtaaTCGATATGTCACTCATTGACAGCAAGTCTagctgtagatctgttctatgtgcactatttctatgctttccacttttaagtttcatttttgtgacttttactttcggttttgtgcaccagcttcaaacagctgaacatACAATATTTTTGCCTATGtgaaaatacatttcacagaAGTTTAGAatgtacaatgattctctacactatacttgcttgttttgtcacaaactgaaattggaCAAACTATTGGAATTTTTGCGATTTCTGCATAGTAAATCTTTATGTATTGTATTTTACCAATGAAAAATGTGTTGCACCTTACTATTGTCAAATGGCCTTTACTTATGAGTGCAATAAAGCATCACCCTAATAGGTGGTAGTGACCTGTGACCTGAAAATAGGAGAGGCTAACACACTCTATTAGGTCTGGCACTCGGACTACCTAAATCAGGATCTCAAAAGAGATCCTTATGTGATTTTTGTTTTCTGATAGAACCTTAATAAATTGATATTCTAAGAAAATGGTCTCACACAGCTAATGGCTGAATTGTTTATACAGAGTAAGTACTGGGCAGTAGGCCTATAATCATAACTTTGATGGAACTGCATTTAAGGCATTATTGTCTACAAACTGCTGAAATTTTACCCATCTATGTTATAAGTCATTCTCTCCCAATGTTGAGTGCACTGGAACATATTCATCAACAATAGtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844410 lncRNA upstream 4396 72146875 ~ 72147090 (+) True G743818
TU844407 lncRNA upstream 7608 72143583 ~ 72143878 (+) True G743815
TU844402 lncRNA upstream 10510 72140331 ~ 72140976 (+) False G743813
TU844400 lncRNA upstream 10510 72140576 ~ 72140976 (+) False G743813
TU844403 lncRNA upstream 10510 72140734 ~ 72140976 (+) True G743813
TU844436 lncRNA downstream 31355 72186764 ~ 72187047 (+) True G743843
TU844445 lncRNA downstream 45676 72201085 ~ 72201301 (+) True G743852
TU844452 lncRNA downstream 54228 72209637 ~ 72209837 (+) True G743859
TU844453 lncRNA downstream 55094 72210503 ~ 72210836 (+) True G743860
TU844612 lncRNA downstream 83878 72239287 ~ 72239992 (+) True G744006
XM_036986150.1 mRNA upstream 48966 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA upstream 48966 72097392 ~ 72102520 (+) False LOC110530489
XM_021613613.2 mRNA upstream 217625 71907559 ~ 71933861 (+) False wnt9a
XM_021613612.2 mRNA upstream 318930 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986146.1 mRNA upstream 333365 71727788 ~ 71818121 (+) True LOC110530483
XM_021611273.2 mRNA downstream 35758 72191167 ~ 72219447 (+) True LOC110529137
XM_021613635.2 mRNA downstream 186087 72341496 ~ 72345654 (+) True LOC110530496
XM_021613638.2 mRNA downstream 338636 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 345900 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 352289 72507698 ~ 72510508 (+) False LOC110530499
TU843344 other upstream 435870 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 435870 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 435870 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 444944 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1524742 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 387317 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 387317 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 387317 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 395967 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 479475 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile