RNA id: XM_021613635.2



Basic Information


Item Value
RNA id XM_021613635.2
length 993
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110530496
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72341496 ~ 72345654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATAGTACACTCACTATTGTTGGCAGCTCTGCGGGCCAGGGAGGGGGTGAGGATGACACCTGGACTGACAGAATAAAGGGCCCCAGCCCCTACCCAAAGTGTTACCCTCTGCTGTGTTGTTCCTCCTGTGGCTCCTGTGCTTAGTTGTGCATCTCTGTTCTCACAATGGCGCCCAAGAAGAAGGAAGAGCCCAAAGAAGCACCCAAACCCAAGGCCCCAGAGCCTGAGCCCGTCAAGATCCCGGAGTTTAACCCTGCAGAAGTTGTGCTTGAATTCACCCCCGAGCAAATTGAAGATTTCAAGGATGCTTTCCAGCTGTTCGACAGGACACCACTCAATGAGATGAAGATCACGTACGGACAGTGTGGTGATGTGATCAGGGCACTGGGGCAGAACCCCACCAACGCAGAAATCATGTACGTCCTTGGAAAGCCCAAGCCTGAAGAAATGGCGACAAAGATGCTGGACTTCGACAGCTTCCTGCCAATCCACCAACACATTTGCAAAGCCAAGGACCGCGGCACATATGAGGACTTTGTTGAGGGACTGAGGGTGTTCGACAAACTGGGCGATGGCACAGTCATGGGCGCTGAGCTCAGGCACGTCCTGGCATCACTGGGTGAAAAGATGAAGGAGGATGAGGTTGAGCAGCTCATGACAAACCAGGAGGACGCCAACGGCTGTGTAAACTACGAAGCTTTTGTAAAACACGTCATGGCATCTTAAAAAGGCTGCCACTGCCGAGACACCTGATAGTTGAAGACAGATGATTGTTCATATGTTTATGTAACGTCCACACCATGCCTCTCATCTCATGTGTTCATCCCTATGTGCCCAGTTGGATTGCTATTCCATCATGTGACAGGACCGTTCAACTAACTGTTCATTGTTTTTATCGTTCCCCTTCATGTTGACTCAAATAACAAATGTTATTGTATATCCCCACTGTTCATTTGTGGATCAAAACTTGTAATTAAACATAATGATTCATTA

Function


GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12749 MYL3; myosin light chain 3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844735 lncRNA upstream 16595 72324167 ~ 72324901 (+) True G744128
TU844623 lncRNA upstream 89467 72251712 ~ 72252029 (+) True G744017
TU844612 lncRNA upstream 101504 72239287 ~ 72239992 (+) True G744006
TU844453 lncRNA upstream 130660 72210503 ~ 72210836 (+) True G743860
TU844452 lncRNA upstream 131659 72209637 ~ 72209837 (+) True G743859
TU844757 lncRNA downstream 5186 72350840 ~ 72351733 (+) False G744148
TU844756 lncRNA downstream 5302 72350956 ~ 72352580 (+) False G744148
TU844758 lncRNA downstream 6520 72352174 ~ 72353262 (+) True G744148
TU844759 lncRNA downstream 9159 72354813 ~ 72355257 (+) True G744149
TU844762 lncRNA downstream 11505 72357159 ~ 72357436 (+) True G744152
XM_021611273.2 mRNA upstream 122049 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 186066 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA upstream 186066 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA upstream 186066 72151910 ~ 72155430 (+) False LOC110530494
XM_036986150.1 mRNA upstream 238976 72097392 ~ 72102520 (+) False LOC110530489
XM_021613638.2 mRNA downstream 148391 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 155655 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 162044 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 196401 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 288584 72634238 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 625880 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 625880 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 625880 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 634954 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1714752 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 197072 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 197072 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 197072 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 205722 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 289230 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile