RNA id: XR_005053035.1


Basic Information

Item Value
RNA id XR_005053035.1
length 56
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC118965654
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72501309 ~ 72501364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACATTTGCTCTTTTAGTATTTATCCAGTAGGTTTTCTCAAGGAGAAACTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844762 lncRNA upstream 143873 72357159 ~ 72357436 (+) True G744152
TU844759 lncRNA upstream 146052 72354813 ~ 72355257 (+) True G744149
TU844758 lncRNA upstream 148047 72352174 ~ 72353262 (+) True G744148
TU844756 lncRNA upstream 148729 72350956 ~ 72352580 (+) False G744148
TU844757 lncRNA upstream 149576 72350840 ~ 72351733 (+) False G744148
TU844875 lncRNA downstream 6334 72507698 ~ 72509841 (+) True LOC110530499
TU844876 lncRNA downstream 10022 72511386 ~ 72511590 (+) True G744264
TU844879 lncRNA downstream 11502 72512866 ~ 72513246 (+) True G744267
TU844904 lncRNA downstream 50012 72551376 ~ 72555556 (+) False LOC110530976
TU845270 lncRNA downstream 228344 72729708 ~ 72730086 (+) True G744625
XM_021613638.2 mRNA upstream 4339 72494045 ~ 72496970 (+) True LOC110530498
XM_021613635.2 mRNA upstream 155655 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 281862 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 345879 72146353 ~ 72155430 (+) False LOC110530494
XM_021613639.2 mRNA downstream 6334 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 40691 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 132874 72634238 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA downstream 166600 72667964 ~ 72711151 (+) False LOC110530502
XM_021613645.2 mRNA downstream 166600 72667964 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 785693 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 785693 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 785693 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 794767 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1874565 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 41362 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 41362 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 41362 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 50012 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 133520 72634884 ~ 72642738 (+) True LOC110530502