RNA id: TU844903


Basic Information

Item Value
RNA id TU844903
length 1345
RNA type TUCP
GC content 0.48
exon number 14
gene id LOC110530976
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72542055 ~ 72555556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCACGTTTATTGTTGAAGAGGAAAGATGTCTGAACTGATTTTATTCAATTTCAACgatgcaaaatatatatttacaGCCTCAAACAGAAGTGTGTTAGTCAACAAAACCAGCAAACCGTTGATAAACGCATTCAACCAGATCACTGGAAAtgagacagagaagaagacCACCTTTGACCAAGCTCTGAGGCAGGTCCTGGAGGAGTAGATTGTGGAAAAGAAAGCACTCGTCGATGACTTCCTGTCTCTCATCATTCTCAGCATTGATGGAGTCACTGAAGGTATCTGCTCCGCCACCACTCCTTTCCTACTGTTGGGAGATGTTCTGGACTGTCTTCCTCTGTACCAGTGTGATAAGGTCTTCTCCTTTGTTGAAGAGAATGTCTCCACCTGGAAGTCTAACTCCTTTTACACTGCTGGGAAGAACTACTTGTTAAGGATGTGTAATGATCTTTTGAGGAGGTTGTCCAAGTCTCAGAACACAGTCTTCTGTGGACGGATCCAGCTGTTCCTGGCTCGTCTCTTTCCCCTGTCTGAGAAATCAGgtctgaaCCTGCAGAGCCAGTTTAATCTCGACAACATCATAGTGTTCAACAAAAATGAGCAAGAGAGCACTCTTGGCCAGAAGCccacagaggaggaggatgggatggaagtggaggagggggagatggggaacCTAGTGCACCTGCTCCATGCTTTGTGACATGACCCATCTATGGACATCTACTAAAATATTCAGACAGTGTTTAGAAGCTTCAAGCTGGACGACATGCAGGCTTCTAAAAAGAAGCTGGAAGAGCTGAGGACGGCAGGAGGAGACCACGTTTACTTTGCCAAGTTCCTCACCAGTGAGAAGGGAATTCATGCCTACTCTGGAGGAGTTCTTTGAAGAGGCCATTGAACAGGCTGACCTAGCCAACATGGAAGATGAGTACAAGGTGGTGCGTAACTCAAACTGGCTGGCGAGCCCTGCGTCTTGTCTAGGAGTCCCCACTTCTTCCAGCCCACCAACCAGCAGTTCAAGAGCCTGGCTGACTACCTGGAGATGGTCATCAAACTGGCCAAGGAGCTGCCTGTCTGAGCATGCAGACTAACCTGGTGTCTAACCAGCAGATGGATAAGCTGGGTTCCCAGTGGGAGATTGAGACAGCAAGGACGTGGCCAAGCAGGACCGTGAGGGGAATCTGGTTCCAGCGCTCAATGCTGCTGGCTTCCCCAAGATCGCAGACATCCTCAACGAGGCATAGATCAAGGCCTTCCTTTCGTTGGTATTTATGCTTAGACATGTACTGTAATTTCATCCTCCATAGAATCATTAAATAAATGCTCAACTTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844879 lncRNA upstream 29480 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 31136 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 32885 72507698 ~ 72509841 (+) True LOC110530499
TU844762 lncRNA upstream 185290 72357159 ~ 72357436 (+) True G744152
TU844759 lncRNA upstream 187469 72354813 ~ 72355257 (+) True G744149
TU845270 lncRNA downstream 174152 72729708 ~ 72730086 (+) True G744625
TU845321 lncRNA downstream 242185 72797741 ~ 72798967 (+) True G744668
TU845353 lncRNA downstream 317143 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 328825 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 329711 72885267 ~ 72885548 (+) True G744796
XM_021613639.2 mRNA upstream 32218 72507698 ~ 72510508 (+) False LOC110530499
XR_005053035.1 mRNA upstream 41362 72501309 ~ 72501364 (+) True LOC118965654
XM_021613638.2 mRNA upstream 45756 72494045 ~ 72496970 (+) True LOC110530498
XM_021613635.2 mRNA upstream 197072 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 323279 72191167 ~ 72219447 (+) True LOC110529137
XM_036986152.1 mRNA downstream 78682 72634238 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA downstream 112408 72667964 ~ 72711151 (+) False LOC110530502
XM_021613645.2 mRNA downstream 112408 72667964 ~ 72714065 (+) False LOC110530502
XM_036986153.1 mRNA downstream 223929 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA downstream 223929 72779485 ~ 72872336 (+) False LOC110530507
TU843344 other upstream 827110 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 827110 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 827110 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 836184 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1915982 70626221 ~ 70626744 (+) True G742095
TU844866 other downstream 79328 72634884 ~ 72642738 (+) True LOC110530502
TU845309 other downstream 304852 72860408 ~ 72872304 (+) True LOC110530507
TU845350 other downstream 306700 72862256 ~ 72864703 (+) True G744696
TU845352 other downstream 311545 72867101 ~ 72868382 (+) True G744697
TU845764 other downstream 693868 73249424 ~ 73250496 (+) True G745083

Expression Profile