RNA id: TU844909


Basic Information

Item Value
RNA id TU844909
length 2169
RNA type TUCP
GC content 0.42
exon number 5
gene id LOC110530976
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72542055 ~ 72555556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacccttttcacattttgttgtgttacagcctgaattttaaatgggCTAAGTTGaggttgtcactggcctacacacaataccccatgatgtttttagaaatgtttacaaattaataaaaaatgaaaagctgaaatgtcttgagtcaattagtattcaacccctttgttatggcaagcctaaataagttcaggagtaaaaatgtgctttaacAAGTCACAAGTTTCATGGACTCATTgtgtgtgcaataagtgtttaacatgatttttgaatgactacctcatctgtcccccacacatacagataattgtaagttCCCTCAATCGaggagtgaatttcaaacacggattcaaccacaaagaccagggaagttttcaAATGCCTCAAAGAACAGCAcccattggtaaaaaaaaaaaaaaaatgctcacATTGAATCTCCCTTTTGAGCTTGGtgatgttattaattacactttggctggtgtatcaatacacccagtcaccacaaagatacaggtgtccttcctaacatAGTTGCCAGACAGGAAGGACACCACTGGGattttaaattgtttatttaaactttatttaactaggaaagtcagttaagaacaaattcttattttacaagatggcctacaccggccaacacggatgacgctgggccaattgtgtgctgccctataggactcccgatcacggccgtttgtgatacagcccagactggggtctgttgtgatgtctctagcactgcgatgctgttccactcaggagccccaatggtgactttaattGTTTTAaacgtttaatggctgtgataggaaaaaactgaggatggatcaacaacattgtagttatccacaatactaacctaattgacaatgtgaaaatgtgcatcctgtctgcaacaaggcactaaagtatctgcaaaaaatgtgtcaaagcaattcactttttgttctaaatacaaagtgttatgtttggggcaaatccaacacaacacaacagagtaccactccatattttcaagcatagtggtggctgcatcatgttatgggaatgtttgtaatcattaaggactgggtagtttttcaggataaaataagaaatggaatggagctaaacacaggaaaaatcctcaaaaaatctggttcagtctgctttccaccagacactgggagattaattcacctttcagcaggacaataacctaaaacacaaggccaaatctacacaagTTGCTTACCAAGGAGTAGCTGAGAATTTTGAAAAagataatgggcaaatgttgcacaatccaggtgtggaaagctcctagagacttacccaaaagactgtaattgctgccaaaggtgcttctatgAACTATTGAcaaagggttgtgaatacttatttaaataagacatttcattatggggtaatgtgtgtgagAAGAAAAATTATACATATTTTGAAtataggctgtaacacaacatgtggaataagtcaaggggtatgaacactttctgaaggtactgtaaaaATCAAGACCAGTAGATGACAAACCCAAGAGACCCATTGGGAAGAGACAAGCTCCAGAAGACTTCCTAGGTAAAGGCCCTGACAGGAAGGTCTTCATGGGGAATGATGAACTCACGAGACTGTGGAATCTGAATCATAACAATATGGCAGCTTGCCAGTCAGTTAGCAGGGAATTCATGCCTACTCTGGAGGAGTTCTTTGAAGAGGCCATTGAACAGGCTGACCTAGCCAACATGGAAGATGAGTACAAGGTGGTGCGTAACTCAAACTGGCTGGCGAGCCCTGCGTCTTGTCTAGGAGTCCCCACTTCTTCCAGCCCACCAACCAGCAGTTCAAGAGCCTGGCTGACTACCTGGAGATGGTCATCAAACTGGCCAAGGAGCTGCCTGTCTGAGCATGCAGACTAACCTGGTGTCTAACCAGCAGATGGATAAGCTGGGTTCCCAGTGGGAGATTGAGACAGCAAGGACGTGGCCAAGCAGGACCGTGAGGGGAATCTGGTTCCAGCGCTCAATGCTGCTGGCTTCCCCAAGATCGCAGACATCCTCAACGAGGCATAGATCAAGGCCTTCCTTTCGTTGGTATTTATGCTTAGACATGTACTGTAATTTCATCCTCCATAGAATCATTAAATAAATGCTCAACTTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844879 lncRNA upstream 38130 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 39786 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 41535 72507698 ~ 72509841 (+) True LOC110530499
TU844762 lncRNA upstream 193940 72357159 ~ 72357436 (+) True G744152
TU844759 lncRNA upstream 196119 72354813 ~ 72355257 (+) True G744149
TU845270 lncRNA downstream 174152 72729708 ~ 72730086 (+) True G744625
TU845321 lncRNA downstream 242185 72797741 ~ 72798967 (+) True G744668
TU845353 lncRNA downstream 317143 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 328825 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 329711 72885267 ~ 72885548 (+) True G744796
XM_021613639.2 mRNA upstream 40868 72507698 ~ 72510508 (+) False LOC110530499
XR_005053035.1 mRNA upstream 50012 72501309 ~ 72501364 (+) True LOC118965654
XM_021613638.2 mRNA upstream 54406 72494045 ~ 72496970 (+) True LOC110530498
XM_021613635.2 mRNA upstream 205722 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 331929 72191167 ~ 72219447 (+) True LOC110529137
XM_036986152.1 mRNA downstream 78682 72634238 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA downstream 112408 72667964 ~ 72711151 (+) False LOC110530502
XM_021613645.2 mRNA downstream 112408 72667964 ~ 72714065 (+) False LOC110530502
XM_036986153.1 mRNA downstream 223929 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA downstream 223929 72779485 ~ 72872336 (+) False LOC110530507
TU843344 other upstream 835760 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 835760 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 835760 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 844834 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1924632 70626221 ~ 70626744 (+) True G742095
TU844866 other downstream 79328 72634884 ~ 72642738 (+) True LOC110530502
TU845309 other downstream 304852 72860408 ~ 72872304 (+) True LOC110530507
TU845350 other downstream 306700 72862256 ~ 72864703 (+) True G744696
TU845352 other downstream 311545 72867101 ~ 72868382 (+) True G744697
TU845764 other downstream 693868 73249424 ~ 73250496 (+) True G745083

Expression Profile