RNA id: XM_021613643.2


Basic Information

Item Value
RNA id XM_021613643.2
length 6676
RNA type mRNA
GC content 0.55
exon number 30
gene id LOC110530502
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72634238 ~ 72714065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaccaacagcttgatcaactctatgtgaagatgtgtcacgctgcatgaggcaaatggtggttacaccagagactgactggttttctgaccaCACCTCTACTTTGTTTTTAAGGTATCTGAAACCaaaagatgcatatctgtattcccagtcatgtgaaatccatagattagtgctaatgaatttatttaaactgattgatttccttatatgaactgtaactcggtaaaatctttgaaattgttgcatgttgcgttaatgtttttgttcagtgtagttctcTTGAAGAAAGGTAGACTTGAATGTGGCCATATAATGTGTTATGGGTTCGTCCTTCTCTTGAAAAATACCTTGCAGAGTGTCCAATCTCCAGCTCCTTGCTTTTGTATGGCATCTTCACTCCAAGATAATATCATGTGTTGTGTGATGTGGTGTATAATGGCGACATTGTCATAGGTGGAAATTATGTCTTACAGAGTCCTGGTTTCTTACAGGGTCATTATGTCTTAAGGGGTCATTGTGTGTTATGGGGACATTATGTCTTAAGGGGTCATTGTGTGTTATGGGGACATTATGTCTTACGGGGTCATTGTGTTATGGAGACATTATTTCTTAAGGTGTCATTGTGTTATGGGGACATTATGCCTTAAGGAGTCATTGTGTTATAGGGACATTATGTCTTACGGGGTCATTGTGTTATGGGGACGTTATGTCTTAAGGGGTCATTGTGTTATGGGTACAGATATAAAGCCCAAGGTGGACCTGTACCTGCCGTGCGGGAAGCCTCCGGGTCAGGATCAGCTGAACGGCCAGGCCTCTAATGGTCTGGAGGAGATGAAGGTGGACGGCAACTATGACACCAGCAGCCCCCCACCGCCCAACTTacaaggcccctcgcccgacagCTGCTGCACCATGGACGgtTTCTGTCAGGCCGGTAGGGACCTCCGTCTGGTCTCCATGTTGACAGAGCCAATCCAAGTCCCAGCTGGCTTTGAGTTAGTCGGTGCCAAGTCCCCCAGCATCCCAGAGCACATCCTGGTGTGTGCTGTGGATCGACGCTTTCTGCCTGATGAGAACGGGAAAAATGCACTTTTAGGGTTTTCAGGGGACTGTGTTGGCTGTGGAGAGAAGGGGTTCCGCTACTTTACTGAGTTCTCCAACCACATCAACCTGAAGCTGGCCACGCAGCCCAAGAAGCAGAAGCACTTAAAATACTACCTGGTGAAGAACTGTCAGGATGCTCTGTGCAAAGGACCCCTCATCTGCTGGAAAGACTGTAAGACATGTCAGTTCTCCATTAGCAGTTCATCCACCTCCAAGCCCAACTCCTCATCCTCCCTGAGCATCAAGGAGAATGGAGGCACCAACAGACACAGCTGttcccccttctccctgtcaGACTCCCCATCTACCAGAATTCCCTCTGCATCCTCTGTGTTCCTCTCAGCCCAGGACCTGGCCCGAGAGGGCAGCTTCCTCAAACCTTTGGCCTCTACCCCTGGGACAGAGACTCTACCAATAGTTCTGATAGTGAACAGTCCGGCTAGCGGACTGGGTGCAGAGGGCCGCCCCCCGTTACTGAGCCTCTCCCAGGTGTCTCTGGAAACCCAAGGACAGGGGTACAGAACCTCAGACCCAGGAAACAGCCCTGTTTTGTCTGCCATGACCCTTGGCCCGCCCAAGAAGCGCCACCGCGGTTGGCACCCCAACCCCCTGGTCCCAGTCCCCCCTACAGCCATCCCTATGCCCACCATCCAACCCATCGTCTACTCCCCAGGCTCTGTACTGGCTATGCCTACTCCTCAGCCGCCTGTAGCAGGGGTCCTTCAGCCCCAACCTGTCACTGCCGGAGAGACTGTCATCGTCCCCAACAACCTGCTCAACACCTCAGGAGTCCGTCCCGTCATCCTCATCGGGCATGGTACGTTACCATACTTCTACGGGAACGTGGGGGACATTGTGGTGAGCCCCCTGCTAGTGAGCTGCTATAAAGGCAACAAGCTGACTGAGAAGACCCTGTCCAGTCTTGGACTGAACAGTAGCCAACTGCTCAGTGTGGAAACCATAATACTCCTCACCCTGCAGTACCTTGCAAGGCTAGGTTCGGAGCAGATCCCTCTGAGGGAGTTGTTAGAGCAGATTGTGCTGAAGGCTATGTTAATTTGTCCTGGAGGTCTCTCCATCTCCCCGGCCCAGCTGCCCTGGCTAGCCCGCCTGGGGGCCAGCGTAACTGGGGGCAGGGTTCAGGTCCTAGTCACCCAAAACTCCCTGGGGGAGGGCATCTCCGAGTCCCTGCGCTCACTCTGCAATGGGCCGCCCCACCAACAGTGCCTGCCCACCTACGTGGTTATTGTTTTTGCCTCCAAGATGAGCGGCAATGAGTTCTGTGTGCTCGTTCTGGGGAAGTACCAGGCGAGAGCACTAGCTGAGGGAATGCTCACCACCAATGAGTTCCTGAAGGAGATCAGCTACGAGCTCATAACAGGAAAAGTCAGTGTCCTAGAGTCTAACTTCAAAACCACATCACTAGGGGACAACCTGGACAAGCAGCTGCTACACATCCAGCGGCAACGGAAGGGCCAGGTCATCCAGCCCTTCCAGGGCGATGTCACCGACCACATCCCGTCCCATGAGGCAGCCACCATGGTACCTCCCTCCGAGTCAGATCTGCTGAGTGACATGTTTCAGATCCACTCTCCCCAGCTGAGTGTAGCCAGGAGCCTGCTCTCCCTGGTGTGTTCCATAGCAGACTCAGGCAGCCAGAGTCTGGACCTGGGCCGCTTCTGCAAGGTGGACTTCCTGGTTCTGGTTTCTCCGTCTCACGTCCTGATGAACCAGACCTCTCATCGCATCCAACAATCAGGAGTGCTAGTGGACCTGGGTATAGAGGATGCTTCCTCAGCTCACCAGAGGTCAGACCAGTACGTGGTGCGTCTAGATGGAGACGTCCACGCCAAGATGGAGGCCTTTATGAGGAAAGTCAAACAGAATCCCTACACCCTGTTCGTGCTCATCCACGACAACTCCCACGTGGACCTGACcagTGCCCGGTCCGGCTCGGTGTGCCACGGGGAGCTTCAGGGTATAGCTGACAGGGTGGTAAACTGCCAGGAGGTCCTGGAGGCCTTGAACCTGCTGGTGCTGCAGGTCAGCTGCTTCCCCTTCGCCCTGCAGACAAGACAGTCCCGCATCAGCGTTCACAACGAGGTGCACTGGCCAGACAACACAGACAGCCTGGGGGAGGTCTCTCCTAAGGAGCTGGTGTACTTTGGCCTGAGGGACAACAGCAGCTCTCTGCGGTGGGGGGTGGCCAGCCCCATCCTGCGCTGTGATGACGCCTTCGAGAAGATGGTCAACATGCTGCTGGAgagACATCCCCACCTACACAGCATGGTGATCAGGAGCTACCTGTTGATCCAGCAGTACACAGAAGCCATGATGGCTCtgatctcctctccttccctacgGGACAACATCACCCCCGAGACCCTGGCCATGGTGGAGGATCTGATCAGTGCTCCGGGCCGGGAGGGGACCAGGGGCCGGGGCCACATGCTGCTGATCCGGGTGCCCTCTCTGCAGCTAGCCATGCTGGCCCAGGAGCGCCTGGAGGACGTCAGGGACAAGCTGGGTCTCCAGTTCTGCTTTGCCATACTGCTGGGGAACCCTGCCGCCGAGCTCAGGCTTCCACGACACTTCGCTAACCGACTCAGGGCCTGGCAGGGATGTGAAAATGAGGACTGGATCCCTCAAACCTATGAGGATCTGGAGGGTCTTCCCTGTGTCGTCATCCTCACTGGAAAAGACCCTCTGGGAGAGACCTTCCCAAGGTCTCTGAAGTACTGTGATCTGCGTCTGATCGACTCCAGCTACCTGACACGTACGGCCCTGGAGCAGGAGGTAGGTCTAGCCTGCTCCTACGTGTCCCTGGGGATGGTGCAGGAGCGCCGCAAGGCAATGGCCCACAGGGACCAAGAGACAGACAAAACCAGCGGCCCCCAGGACCCAGACCTAGAGCTTCATGTGGACCTGGAGAAGTCCCAGAGCAATGTCAGCACTGCTACTAAAGCCTCCGgCTCTCTGGCAGAGAACGGGGTCAGCTCTTCTGACGTCCCTGACTCCTCCCAGAAGCCCTCCACCTTCTCCTGCCCCCCCGGAGGCAGGGCAGGCAGCATCATGATGGACTACAGGACAGTTCCGGGCACGGCCTCATCCTCCCCCTGCCGGGTCAAACAGGAGTGTGACTCCCTGGGTAATGCCGCCCCCTGCCCCTCCAACACCCCTccctcctgctcttcctcctcctctacccaatGCCCCAGCCAGTCCACGGGGTGTGGTGGGGGCAGCAAGTCACCTCTAGTCTCTCCGCGGAGTGTCATCCTGTCCCACGCAGCCTACAACCTCCTGGCTCCAGAATCAGGGAGCCAGCTGAGCTCCTTCTCCCTGCTGCCTCACGCTGATGTGGGCTGGAGCAGCCTGCTGAGGCCCCTCGTCAGACCTAACCTCCAGGGGGCAGAGCAGAGCATCTTCTACAGACAGTGGACCGTAGCCGGGCAGCACCATGCCGACCACGAGGCTCCCCCGGTGCCACACCCACGACGCCTGCTGCTCAGTGGACCCccacagGTGGGGAAGACCGGTGCCTACCTGCAGTTTCTACGCATCCTGTTCCGCATGTTGATTAGACTGCTGGAAGTGGATGTGTACGATGAAGAGGAGCTGGAGGAAACGACCACGGACATGTCTGAGGCCACACCCCCAGCCAGGACCCAGTGGCCAGACATCGAGGAGATCCGCAAACTACCCTTTGACCTCTTCCCCAGAGACCCTAAGTTCAGAAGGGCCAGTTCCGTGTACACTGACAAGATGCCAAAGGGCTTGAAAGATCCCAAACTGGAAGGAGAGAGCCAAATGCCTGTAAAGAGGGAGACTGTGTCGATTCGGCTGAGTATGTTCGCGGCCCACAATGCATTTCACCATTGTGAGCAGTGTCACCATTATTGTGAAGGAAGCCCTGCCACACAGCTGTCGGAGTGCACCTTCCACGCCTTCACATTCTGCTCGTCCATGCTGGGAGAGGAGGTGCAGCTCCACTTCATCATCCCCAAGGCCAAGGAGCAGCACTTTGTCTTCAGCCAGCACGGCAGTCACCTGGAGAGCATGAGGCTGCCCCTCGTCTCTGCGCAGGACCCCAGTCTGTTGAAGAGCCCCATCTTCACCCCGACCACGGGGCGTCAGGAGCACGGCCTTTTCAACATTTTCCATGCCATGGAGGGCACCGCCCACCTCCACATCCTGGTGGTCAAGGAATACGAGATGCAACACTACAGGAGAAAATGGCCCAACCACATCCTGCTGGTGCTGCCAGCCACGTTGAACAGCGCCGGAGTCGGGGCAGCTCGGTTCATGATCAAGGAGCTGTCATACCACAACCTGGAGCTGGAGAGGAACCGTCTGGGAGAGCAGGGGGTCAAGAGGCAGGACATCTGGCCCTTCATAGTCATGATGAACGACTCCTGTGTGCTCTGGAACGCACACCAACCCCAGTACAGCAGCAGtgataTGGCAGACACAGGGCCCAGTCTGACCAACGTGTCTTTGAAGACGGTGCTGCAGCACATTGAGGCTACTCCTAAGATCTTCCTGTATACCATGTGTGGCACCCGCAAGTGGAGCAGTGCCCTGGCCCGCCGCCTGCCTGCCATGCCCTTCTCCCGATGCCACCTCCATGACTTTGTCATGCTCAATGTGGACCTGACACAGAACGTCCAGTACGACCTCAACAGGTACAGCTGTGAGGAGGTGGACTTCAACCTGAGAGCCAACAGCAGTGGTCTGCTGCTCTGTCGTTTCAACCACTTCAGCCTGATGAAGAAACACATTCCCTTTGGAGGACACAAGGACTTTCTGGTCAAACCCAAACTCACAGTGATGGAGAATCCAGCCCCCATCAGCCCGTACCAGTATGTCTGTGCCCCAGACAGTGATCACACCCTCCTGGCTGCCCCGGCTCAGTTCCTCCTAGAGAAGTTCCTCCAAAGTTGCAGCCACATACTGTTCCCCAAGGCAGTACAGAACAACAGCAACCCTGTGCTGTCCATAGACAGTTACCTCAACATAGGCCCTGAGAATGCGGAGGAGGAGCGAGCAAATCTCCAGTGTCCAGTCTGTTCCCTCAAATGCTATATGCAAGTCTTGGAGCACTACAGGAAATCAGACAAGCAGTTTCTGTGCTTTGTTGGGAAGTCAAAAGGCCTTGCATTGTCCAAGCAGAGGCTTTCTCACTGGGTTGTGGATGTCGTTGCTCAGGCCTACAAGGGTATAGGGCTCCCTGTCCCAGAAAGTGTGATATATTACTGGACCAGAAGAGTTGTCACATCTTGGGCTGCACTGAGAGGCGTCCCCCTGAATGAGATATGCACAGCTGCTGTCTGGTCGTCGCCCTGCACGTTCTCAAGATTTTACAAGGTCAACGTTGCATCTTGCCACAACATGGGGTCTGCCATTCTTCCAGTGGCACCGGCACATTAATCAGAGGTGTCAGTATGTTACGTCAGCTCCAGGCCACACTCCTCAAACCTGGACCACCAGGGTCTGGTCTTCAGTGGCCTGCTGCTCTACCTGTGTGACTCCTTCGTTGTCTCTGGCCTCCTCAAGAAGTTTCACTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844904 lncRNA upstream 112408 72551376 ~ 72555556 (+) False LOC110530976
TU844879 lncRNA upstream 154718 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 156374 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 158123 72507698 ~ 72509841 (+) True LOC110530499
TU844762 lncRNA upstream 310528 72357159 ~ 72357436 (+) True G744152
TU845270 lncRNA downstream 18557 72729708 ~ 72730086 (+) True G744625
TU845321 lncRNA downstream 86590 72797741 ~ 72798967 (+) True G744668
TU845353 lncRNA downstream 161548 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 173230 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 174116 72885267 ~ 72885548 (+) True G744796
LOC110530976 mRNA upstream 112679 72542055 ~ 72555285 (+) False LOC110530976
XM_021613639.2 mRNA upstream 157456 72507698 ~ 72510508 (+) False LOC110530499
XR_005053035.1 mRNA upstream 166600 72501309 ~ 72501364 (+) True LOC118965654
XM_021613638.2 mRNA upstream 170994 72494045 ~ 72496970 (+) True LOC110530498
XM_021613635.2 mRNA upstream 322310 72341496 ~ 72345654 (+) True LOC110530496
XM_036986153.1 mRNA downstream 68334 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA downstream 68334 72779485 ~ 72872336 (+) False LOC110530507
XM_036986156.1 mRNA downstream 68334 72779485 ~ 72872336 (+) False LOC110530507
XM_036986155.1 mRNA downstream 68335 72779486 ~ 72872336 (+) False LOC110530507
XM_021613652.2 mRNA downstream 190067 72901218 ~ 72909612 (+) False LOC110530508
TU844866 other upstream 25226 72634884 ~ 72642738 (+) True LOC110530502
TU844903 other upstream 112408 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other upstream 112408 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other upstream 112408 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other upstream 112408 72551376 ~ 72555556 (+) True LOC110530976
TU845309 other downstream 149257 72860408 ~ 72872304 (+) True LOC110530507
TU845350 other downstream 151105 72862256 ~ 72864703 (+) True G744696
TU845352 other downstream 155950 72867101 ~ 72868382 (+) True G744697
TU845764 other downstream 538273 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 882486 73593637 ~ 73595238 (+) True G745410

Expression Profile