RNA id: TU845309


Basic Information

Item Value
RNA id TU845309
length 3687
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC110530507
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72779485 ~ 72872336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacagatctcttcaaataaaaagtacattatttcaatctcacacacacacacacacacatctcttcaaataaaaagtacattatttcaatctcacacaccacacacacacacacacacacacatagatctcttcaaataaaaagtacattatttcaatctcacacacatactcattccctTATGTCCCTGGACATTTGGAGAGGGATGCCAGTGCCATCCTAGACCACTCTTCTAGCCCACTGGTAGCACTATGAGTTGTCATGTTACCTGTTGAGTACTGATGACGAAACAGCTTTTGTCCTGGGACCTTTCCTTCTAGTAGTACTACTTAGTGTGTATGATTTTTAGACTTTGAAGGACGCGGTTGCAGCTCACTTTACCTAGAAGAgactcctctcccccacctcccacCTAACATGTTTTAAATCTAATAACCTCATTGTTcatgccctcctctgtctccaggCCTTTAGTAGTGAGTAGACTACTCCTCCTCAGGCCTTGTGGAGTTGTACCAGGGGCTCCTGTTATAACACTGTGACTGGTTATTCTCAGCAGGTAACTCTAACTCAGCTCTAATGGCAGGGGGCTCGCTGGATCTGCTCCAGCCCAACAATCTGGCACTAAGTTGGTCCAGCGGTAATATCCCGGCCatgcagagagacaaagacaacaCCAATGTCAACGCTGACGTTCAGAAACTGCAGCAGCAACTGCAGGACATCAAGGAGCAGACCATGTGTCCGGTGTGCCTGGACCGGCTGAAGAACATGATCTTCATATGTGGCCACGGCACCTGCCAGCTGTGTGGCGACCGCATGAGCGAGTGCCCCATCTGCCGCAAGGCCATCGAGAGGCGCATCCTTCTGTACTAGAGTCCCAGGCTTCGGTCTGAGCCTTCtacacccccaccaccccccatGTCAAGGCCTTCGAGAGGCGCATCCTCCTGTACTAGAGTCCCAGGCTTCGGTCTGAGCCTTCtacacccccaccaccccccatGTCAAGGCCTCCGAGAGGCGCATCCTCCTGTACTCGAGTCTCAGGCAGGTCTCGGCCTAATCCCCCATCTACAACCAGCCACACCAGCTGctgctctcccatctatctcgGCGTCTTTACaccagaaaaacaaaaacatcagAATTACCAATGTTGCTTCTTTTAAAAATTGAAATGTTATAAAACAATCAAACATTATACTGAAAGAGGTCTTTGGTGTTGTAGCTCAGCTGAAAGCCTGTAGCAGCCTGATTCTTTGCTTTTCTCCTCAGAatgccctttctcctctctctcgtatctctctctcgctcttctccctctcccctctgttgtTTTCCTGTTTCTGTGTGAGAACGCCTCTTCCTGTTATTATTGTAGTGGGGTTATTGGCACATATCCCAACACTGCCCTGTGTTGGCCTTGGGATATGGACTGAGGGATATGGTCAGAGCCACTTAGTTCCATCTACAAGGTCCTATTCATTAGGGCACGCTCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCAAAGGGCTGCCTCTCCTGTCAAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGAAGGGCTGCCTCTCCTGTCGCTAAACCTAAAACTTAAAACCCATTTATCATTGATTCTATTTGTATTTCTTATGCAAGAGTATTGGTAATAGAAGCTACTGACGTGGATATTCATTACTTTTGTAGTTTACTCAACATTTCATGATAGCTACAATATGATGACATATTTGTGTACATGCAAAAAAAATGCGATATCTAACACTTTTACAAGTTCAGCCAGTCTTCTTCTACACGTGCATATTTGAGATGGGTTGTCGTGACATGTTGgcgattttggcaatgaggccctttatttacccagagtcagatgaacttgtggataccatttgctAACTAGCgcagttgctaactagcgttagcacaatgacctGAAGTCTGCATAACATGCTAGCGGATAcaatagactttcagtcattgtgctaatgctagttagcaatggATCGctaaaactacctctaacttccttcatactggacacagacataaaaatggtacccACAAGTTCATTAGACTCTGGGGCAGTAGACAAAggtcattgccaaaatcccgaagtatgcCTTTAAGACCTGCACAGGGCAGGTTAGCACGCTATCTAGGGAGAAAAACTGCTGATTGAGCAAAAGCAAAATTGCTGTTCTGTTTGTCTAGACTTTGGAGGTCCAAATCCACCTTAACTCTGACTGACTGATAAGGTGGTGATACCGCTGCAGTCCAATCGTCTGCTAACACCTCATCACCTGTACCTTGTTTACCAACCTTTCTCTCTGGAGAAACACAGACAGGCCAGGCACTACAACTTTAGCATTACAACACCCGTGGTCTGCAATTGTTAATACTTAAGTACAGTAGACCCAGTATAGATGAAAGTCAAGACAGTGTTTCATTCAGCCTACTTATAAGTGAATACTATCATGTACCTGCTGGACATTTCTGAGGATGAATGAACTTTATTGAGCATTTGTACAAACAGAGTATGTCATCATGTATGGCACAAGTTGTTTTAGAGCTGTTCCAAGACTATAGATGGTATTACCTGTCTGGTATGCAACCATCCTATGATTCTTATAAGCATCGCTAATAACCATTGATTATTCATGTGCCATTGCTTCCAAAAATGATTTACCTGTTAAATGTTGTTTGGGGATAAGGTGCTCTTAATCTGGTATTgcttttatttaaatgtattttgcagaATGTTTTGTAATAAACACATTTATTGAGCTAGAGTGTACAATCTAATAGAAAGCCAAGATGATAAAATGTAGAGTAAATTATTTTGTATTGCTGCCCACAAATAGGATTTAGAAGTGTATCTCTATAGAGCCTTAGCTATAATGTAATGTAGCCGTCCACTCTCACCCACACATCCTGCTTCAATAtcaatgttgaaatgtgtcttttAGTTTGATAGACTTCAAGCAAAAAAACACTAAGCATTATTTTATCTTGTTTTGTCTGCAAGTCTAACATGTTCAGAGTCAATAATGAGACTGGTGATGAGGGAGACAATTTTGTCAGGTTTTACATGTATTCTTCTGCCAGTGTTTTGGGGGATAGAAAGAAAATGGTTCCACTGGTGAAGTTGACACTAATAAGGCAGATCCGTCTGTGTGGAGCCAAGCTGTTCACCTCGGTATAAACTGACCAGCTTGACAACGCAAATAAGCAATTTTATAGGAAAGAAAGAAAAGTAGCTTGATACTTTTTTACTCCCCGTTTTTATTTCACGGATGGCGTTAACATTCTAAAAGCACTAATATTGCTTTATGGTAGTATTGTCTTGTTAGTTGTTATAAAGGCCTATTTTGTACCTTATGTTCAAAACTTATTATACCTGTCAAGATTTAAAGGTTTCAATAGTATTCTTTCCCTTTTTAGGCATGAATATTTTATTTATGCAGTATGACATGTATTATAAAAGCTGGTCACTCTGTATTGCTTAAGTGCTTTTCAAAGCACCATGTAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845321 lncRNA upstream 61441 72797741 ~ 72798967 (+) True G744668
TU845270 lncRNA upstream 130322 72729708 ~ 72730086 (+) True G744625
TU844904 lncRNA upstream 304852 72551376 ~ 72555556 (+) False LOC110530976
TU844879 lncRNA upstream 347162 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 348818 72511386 ~ 72511590 (+) True G744264
TU845353 lncRNA downstream 395 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 12077 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 12963 72885267 ~ 72885548 (+) True G744796
TU845470 lncRNA downstream 15568 72887872 ~ 72888104 (+) True G744806
TU845481 lncRNA downstream 27356 72899660 ~ 72899959 (+) True G744817
XM_036986152.1 mRNA upstream 146343 72634238 ~ 72714065 (+) False LOC110530502
XM_021613645.2 mRNA upstream 146343 72667964 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA upstream 149257 72667964 ~ 72711151 (+) False LOC110530502
LOC110530976 mRNA upstream 305123 72542055 ~ 72555285 (+) False LOC110530976
XM_021613639.2 mRNA upstream 349900 72507698 ~ 72510508 (+) False LOC110530499
XM_021613652.2 mRNA downstream 28914 72901218 ~ 72909612 (+) False LOC110530508
XM_036986157.1 mRNA downstream 28951 72901255 ~ 72909612 (+) False LOC110530508
XM_021613653.2 mRNA downstream 29323 72901627 ~ 72909612 (+) True LOC110530508
XM_036986158.1 mRNA downstream 78898 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA downstream 78898 72951202 ~ 72975991 (+) False LOC110530509
TU844866 other upstream 217670 72634884 ~ 72642738 (+) True LOC110530502
TU844903 other upstream 304852 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other upstream 304852 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other upstream 304852 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other upstream 304852 72551376 ~ 72555556 (+) True LOC110530976
TU845764 other downstream 377120 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 721333 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 847412 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 2080381 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2142340 75014644 ~ 75033896 (+) False nedd8

Expression Profile