RNA id: XM_021613653.2


Basic Information

Item Value
RNA id XM_021613653.2
length 4724
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110530508
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72901218 ~ 72909612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taTGAAGAGGCTATATCTCGAGAGGGGAGGACAGGGTTTTGACACGGAGAGATTCAACTCCTCCGGTCAAAGCGCGCGCTGTGGTTACATGTCTAATGGATTAATGCCGTAGGCGCTATTACCAAAAATATATTGTCTAGAAGTCCATACCCATCATATAGTTTTCATAGAGAGGATCGAGTCTTGTGTGTTAAGTAGCCTTTAGCCCGGCTATAATTTTGTGTCGTGTTCTCAAAATTAAGCCAACACGTTTCAAAATGAAACCAAGCCCCACATCAAGGGCAATGTTAGGTTTGTGTTGCGTAGTTTCTCAGAGGGTAAGCCATGATATGATATTATTATCATGGGGAGGACATGTTTCTTGCAAATCAATAGTATCGCATGAAAGGGCAGACAACACCCTCACGATTTTCTAGTCCTACGGTGTATGGAAAGTGATCCTGGATGGACCTGGGCGAAAACATCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCCGGGTCACCGGCTGAACAGAGTTACTTACACGGCGGGCAGGGCAGGAGGGACAGCCACGCGCACGACTCGGAGGGGCTCAGGTCACCGCTGCCAAGCGATCAAATTGACACAGTGGGACACCGGCGCGCGGAAGGGTCAGGCAGATCATCTCTACACTCCTACGTTCAGTTCGGACACGGGCACCATCACAACAACACTGAGGACATCACTCTGTTCACAGATTTAGACCAGGGCAATAAACTCATCATTTCCAGTGGAGCGCACCCGCACCACAAGGGGGGCCTTATCGTTGACCCCAGCGACATGTATCAAACACTAGCCATCGCGGCGGCCCACCAGAGCCAGGCGGGGTACGACTCGCCCTCTGGGGGCTATATGCACTCCAACCCCAATTCTCCAGTGTATGTACCGAGCTCGCGGGTGGGACCCATGATACCCAGCCTTCCTTATTTGCAAGCCAGTGGGTCGTCTCAGCCCAGCCATGCGGTCACCAGCCACTCAGTCTGGTCGCAGTCTACTCCGGAGAGTCCCTCCTACAGCACCGGGAGTCCTCATACCTCCAACCGTTTCCACTACCCTCCAAGCCCGCCAATTAACAACGGGGTTCCCAGGGATAACGGCTACAGTAACCCGCTGAATATGGGCAGTCGAGACCAGTACGGTCTCTCACGCCCCCTCAGTGGATCCTACACCAGCCCCTACTCCCAGTATGTTGGACCGCAGCTATCCCAGTTGTCCTCGCCTTGGCCCGGAGGACCGTTTGATAACACCATGCTGCACACTTTGCAAAGCAGAGGTGCGCCCTTGACGATTCGAGGACCTAACGGAGATATTCTCGACGacctgggagagagcagggaATGTGTCAACTGCGGCTCCATCTCCACGCCGCTCTGGAGACGCGATGGCACGGGCCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAATGGACTCAGCCGGCCATTAATTAAACCACAGAAGCGGATGTCATCATCCCGGCGAATCGGCCTCTCCTGTGCCAACTGTCAGACGAGCACAACCACCTTATGGCGCAGAAACGCAGAGGGAGAACCGGTGTGCAACGCATGTGGGCTCTACACAAAATTACACGGAGTACCTCGGCCCCTCGCCATGAAGAAAGAGGGAATTCAGACGAGGAAAAGAAAACCTAAAACTTTGAACAAAACCAAGGGATCCTCAGGGAATAGTAATTCAGTCGCCATGACTCCGACGTCCACGTCTTCTTCCAACTCTGAAGACTCGAAGAACAGCTCTCCGAACACGCAGGTGCCAGGGGTTCAGTCCTCTGTACTGAGTGGCCCAGTGGAGGGCTCAGCTGGCTCTGGTGGCTCTGCCGTGGTCAAGTACCCAGGCCAGGACGGCCTCTACACCCGTGTGGGCCTCACCCAGTCTGCAGACGTAGCCGGCTCTGTCAGAGGGGAGCCCTGGTGTCCTATGGCCCTGGCCTGAGTCACCGAGCTGGGGGACGGAACCCACCgcactagcctctctctctctctctctctggatgtcCTGCTGCTGAGTGGTGGAAGTATTCAGTGCCTCGATGGCTCTGGGCCTGTTTCCTACTTCCCAGCTAACAACTGTTGGACAGAGACAGCCTTTTTGCCCCTTCACACCCCTGCAAGTTTGAAATGTCTGTGGAATATGTGGGATTGATTTCCAGAATGATATGGGAAAACCTTAGTGCCTTAACACAAAGGGAAATAAGTGAGAGGTGATGCCTTCTTGTTAATCTGCAGTTGAAATGCTTTCTGGACCGACCTGCTGTGTGTGtactcaatatctctctctctcagatatggAGGTGGATCAAATGTTCTTTGTTGTTTGAAATGAAGAAACCTGTACATAATGCTATGGATTCCCCCACTCAAGACAAAAGCGGTTAATTGGATATTAGTGCTTGATAAAAGCACTATCCATACAAAGGACATTTTTatgatatatttttttgcaaCTGGAATCAAGCTATCAAGTTACCAAGACAACCTTCCTGAATCAAGATAAAGTATTTATTAATCTTCCATTGTTGAAAACATGAGTATGATTGTTAAATAAAGATATGGACACAGAGTAGAACTGAAATAATTTTTTTTCTTATGTCTTCATTTTAAATATGATTGTTCGTTTCTTTCTCTCTTGTTGAGTTAGTAGTTGTTAGTTATTGCAAATATGTCTTTCCACTGATAGCTCTTACTGTAGGCCTATCTGACTGAAACTCTTATGGTTTTAAACAGGGTATCAAAGACTGTGACATCCTATGTCAGTcaatttttgtttttaattatttACTCAATTCTTAAATAATCAAATCCTACAGATGAAATTAAAATACTGTTAATTTATGGTACTATTTTGGAAGAAAttggtagaagctgttttttctAAGGTGAGGATAACAAATGTTTAGGACATTTTCGCAAACTTTTTGACACATGTACAACAGCTAGCTAAGTACTGTTTGAACAAATGGCACCCACAATAATTTTATAGATGCATCTTTTTGTTACAATACTAAACTGTAAAAGAGGACTGCTGCAATATCTTCTGTCTGCAACAAAGACTACCTAACTGATATAAACTGTATACATTTACGGTTGCATACATGCATGTGATTTTCATGATAAAATTTGACAGAAATAAAATGAAAAGGCTAAATGGCATTGAGGTCAACATAGATTCATTTAATGTCACTACATGGAGAAATAGAGGTGGAATTAATAAATTGCCCCTGATAAGTTTTCAGTTGATAAAAGAGGAATGGCTGttcttacagatgtaggatcttaatttgagccagtttgctacagcaggaaagtaatcttgcagcaacaggaaatatgaattattatgtggattataatgaatggacatttttgtaggggttgatacatttttcgttagggaAAATCATTTCTGAAATgtaaaagtggaaattacaaactttagaagactcaaatacactacaagtttgcatttcctgctttgcagaaaattctcagcaacaataGAATAATccaatgaagatcctacatctgtacaaccTGTTGTAGACGATGTCATAAAACAACATTTGTCAATGAGAGGAATGTCACACATTGACTCCATGGTGAGGAAACTGTAGTTTGAGATGTATTGGAGCTGTGTGGAGAATAATCTGAACAGAGTGAAGTATGCCATTTATGATTCAGTGATGTGAAAAAAACATGTTATATATGTAGCTTGAAAACAACCTTTCACAGCTTTCAAGACATAATGACCTTATATGACAAATCATTGTTGATATTGGTCTGATACAATTTGCCCTTGTATTTTTACTCAAAAGGTCTACAGTACATTTTCCTGACTTTCAACGTTCTAAGTAGAATTATGACTTTCCCATTCATTACACAGAACATACTGTAcgtgtctctctcctccagtagGGGTGTGAACGGCGTCTCGTTTGACAGAACTCTAAGTAGAATTATGACTTTCCCATTCATTACACAGAACATACTGTACGTGTCCCTCTCCTCCAGTAGGGGTGTGAACGGCGTCTCGTTTGACAGAACTCTAAGTAGATCCATTTTGAGGCCAGAAAAATTCCTCTAGCTCCCTGGGAAATGTCCATTTCAGTGGAATGAATCTGATGAGTTAGTAGGTTATTGTGAAACTGCCGTTTAAACTGCATTTCAGTTTCACCATCAGGGTTCTTCAGCTGAATCAGTGTTCTTTTCTgaacttatttatttttttgaaatatcaaGTTTATTAATAGCATTGTTTTCCCCTACTTTTTGTTTGGATATTTGTATTTCTTTGGTTGGTTGTTTTATTCCTGATATAGTTTTTAATGATCTTATTTAAATCTCTGAAACAAATTCTTCTGATGATATCAATGTGGATTTGGAATAATTGCTCCTGTCTTAGAATATTTGAAGGAAATCAACACACTGTGGTTGTCATTGTTGGTAGTGTATACTGTGCCAAGGTTTGCAGCAAATATAATTTTAAGGGTTTGAGTGCCATCTTCATGTGCTGTAAAGGTACATATACACATTTTGAAGTTTTAAAGAGAAATATGTCATGAGAAGCTGTTGGAAAGACAGTAGTAATGGATCCCTGAGTGATTTGTATCTCCAGACAGTTTTTCTAGTTGTTTTCTCATTCTGTATTAAAGTTAGCCATTCCTCTTACACACAACAACA

Function

GO: NA

KEGG:

id description
K17897 GATA6; GATA-binding protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845482 lncRNA upstream 607 72900721 ~ 72901020 (+) True G744818
TU845481 lncRNA upstream 1668 72899660 ~ 72899959 (+) True G744817
TU845470 lncRNA upstream 13523 72887872 ~ 72888104 (+) True G744806
TU845460 lncRNA upstream 16079 72885267 ~ 72885548 (+) True G744796
TU845459 lncRNA upstream 16990 72884381 ~ 72884637 (+) True G744795
TU845493 lncRNA downstream 18470 72928082 ~ 72928437 (+) True G744829
TU845503 lncRNA downstream 43065 72952677 ~ 72952885 (+) True G744839
TU845466 lncRNA downstream 46121 72955733 ~ 72955899 (+) True LOC110530509
TU845465 lncRNA downstream 54710 72964322 ~ 72964612 (+) True G744801
TU845464 lncRNA downstream 67844 72977456 ~ 72979123 (+) True G744800
XM_036986153.1 mRNA upstream 29291 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA upstream 29291 72779485 ~ 72872336 (+) False LOC110530507
XM_036986156.1 mRNA upstream 29291 72779485 ~ 72872336 (+) False LOC110530507
XM_036986155.1 mRNA upstream 29291 72779486 ~ 72872336 (+) False LOC110530507
XM_021613645.2 mRNA upstream 187562 72667964 ~ 72714065 (+) False LOC110530502
XM_036986158.1 mRNA downstream 41590 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA downstream 41590 72951202 ~ 72975991 (+) False LOC110530509
XM_036986159.1 mRNA downstream 41591 72951203 ~ 72975991 (+) False LOC110530509
XM_036986160.1 mRNA downstream 41901 72951513 ~ 72975991 (+) False LOC110530509
XM_036986161.1 mRNA downstream 42235 72951847 ~ 72975991 (+) False LOC110530509
TU845309 other upstream 29323 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 33245 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 36924 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 258889 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 346071 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 339812 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 684025 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 810104 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 2043073 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2105032 75014644 ~ 75033896 (+) False nedd8

Expression Profile