RNA id: XR_005052946.1


Basic Information

Item Value
RNA id XR_005052946.1
length 2526
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110530509
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72951202 ~ 72975991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTATTGGTCCAATTTTTTCCCTGCTGCCACAATACTGCAGACACATAACCATCCTGTTTTAGTCAGTTTAAGCTTGCACTTACAATACAAGGCTTTAACATTTGCTATCTACATAAGCACACTTTTAATGTCATATTGACAAAACCTCTGCTCGCCGATTCGAATCGCTGGAAGTGGACCATGGCGGCTGCCACGAGCAGCAATACATCCACAACCACGCTCCAGATAAAGCATTCCAGTATCGAGCATACGCGGAAACGCATAGACCCTCGGAGGAGACAAGCCGCACTCTCTTTTCTCAGTAACATTTCTTTGGATGGTCGACCGGTGCAAGATGATGCCGACAATCAGATCGAAGAGGATAATTCAATTGAGTCGAGGACTAGACAGAGCCTGGTTTCTGCAGCAGAGCGTCCGCTGTACGCGGCTGGCAGTGGCACAGGGGTAGCGACCCCCACGGCCACCCAGGCGCTCGCTATTGCAAACCAGGCTCTGATTGCTAACGCACGAGATAGTTATAGTTTTGGGATTGGTCCCGCCGCTGCAGCTCAAGCGTGTACAGATCCGGAAGGGGATGCTTTCGGCCCTTCGATTTTCAGTTCGCCTTTCTCTGCAGTACCAGCCGCGATTAGAGGCAGGCTTCAAACCTACACTCAGGGAGTTGTGCCTGCTGCCTACTCCAGGCAGGCTTCCCAAGGCTTCTGTTTGGAGGGAGGACAGATAGCCAACTCTGTCCTGGAGCTGCAGAGATCAAGACGGAGGCTCATCTCTCAGCGATCCTCCTTGGAGACACTGGAAGACATTGAGGAGAACGCCCCTCTACGCAGatgCAGAACCCTCTCAGGTTCACCCCGACCAAAGAGCTTCAAAAAGGTCCACTTCATCAAGAACATGAGGCAACATGATATGCGCAATGGAAGGATAGTCCTAATCAGTGGCAGAAGATCCTTGTATAGTGTATTTTCTGTCCTGCCCTATCGAGATTGTAGCCAAGCAGGGGATGTGAAACTGGAAAGCGGGCGGCAGCGTCACCCCTCGGGCGGGGTCAGTGCCAAGGAGATAGTGATCGGGCTGGAGGGAGTGGAGCTGGGGGCCTATGGAAagACTGTATCATACACTCAGTTCCTGTACCCCACCAACGCCCTGGGCAGCGGACGCAGGAACACCATCGACTCCACTTCATCCATCTCTCAGTTTCGTAACGCCAGCCACCGCAGCCTCAGCTTGGGCCGGGCCAACAGCAATCAGAGCAGCATCGACACAGGGAATGATCTGGGGGACTTGATCCGGGAGTATGACCCCAATCTGTTGGACGATCCCCAGTGGCCATGTGGGAAGCACAAGAGAGTCCTCATCTTCCCCTCCTACATGACTACAGTCATAGAGTACGTCAAGCCTTCTGACCTCAAGAAGGACATGAATGAGACGTTCAAGGAGAAGTTCCCCCACATACGGCTGACCCTCAGCAAAATCAGGAGCTTTGACCTTTTAGCGTTTGTCTTATCTCCCCGCCTTCACCACCTTCAACCCCCCCCTCCAACCCCAGTCTGAAGAGAGAGATCCGTAAATTGGCCCAGGAAGAGTGTGGCTATGAGGAACCCACCGTAGCCATGGCCTTCGTCTACTTCGAGAAGCTGGTCCTCCAGGGGAAACTCAACAAGCAGAACCGCAAACTCTGTGCCGGTGCCTGCGTCCTGCTCGCTGCCAAGATTGGCGGAGACCTCAAGAAGCACGAGGTCAAGCAGCTCATAGACAAACTGGAGGAGAGGTTTCGTGTGAACAGGAGGGAGCTGATAGCCTTTGAGTTCCCTGTGCTTGTAGCCCTGGAGTTCAACCTGTACCTGCCTGAGCACGAGGTCATGCCCCACTACAGACGCCTCGTCCAGACCTCCTAGCATTAGTGACCCGTCAGGAGGAGCACCTAGACCATGCCCTTCTGATCCAGGACCAGAATCTACACcacaccctcctccccaccccacCACTGGGTGCCACGACCTTGTCTCCTCTCTGCAGCCTGGGGATCCATTATGGACCATGATGTGGGAGCTCCACTACACTCTACTGCAGGCCACATTCATATCTTCATTTTCAGATCAAGACTTGAAAGCAGCCAAAGTGACACGTATTTCCATACATATATTCTTACTTCAACATTTTTCTCAGACTTTTACTCCTACATTCGAGACTACTTACATCTTCAAAAGACTTACACTAtcattcaaacgtttggggtcactaagaaatgtccctgtttctgaaagaaaagcaaattttttggtccatttaaaataacatcaaattgatcagaaatacagtgtcgacattgataatgttgtaaatgactattgtagctggaaatgacagatttttaaaaATTGAATATTTACATAGGTGTAcaaaaggcccattatcagcaaccaccactcctgtgttccaatggcacattgtgttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgttctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845493 lncRNA upstream 22765 72928082 ~ 72928437 (+) True G744829
TU845482 lncRNA upstream 50182 72900721 ~ 72901020 (+) True G744818
TU845481 lncRNA upstream 51243 72899660 ~ 72899959 (+) True G744817
TU845470 lncRNA upstream 63098 72887872 ~ 72888104 (+) True G744806
TU845460 lncRNA upstream 65654 72885267 ~ 72885548 (+) True G744796
TU845464 lncRNA downstream 1465 72977456 ~ 72979123 (+) True G744800
TU845510 lncRNA downstream 8300 72984291 ~ 72987041 (+) True G744846
TU845514 lncRNA downstream 17527 72993518 ~ 72993937 (+) True G744849
TU845552 lncRNA downstream 87972 73063963 ~ 73104651 (+) True G744883
TU845700 lncRNA downstream 145118 73121109 ~ 73121735 (+) True mmp16b
XM_021613652.2 mRNA upstream 41590 72901218 ~ 72909612 (+) False LOC110530508
XM_036986157.1 mRNA upstream 41590 72901255 ~ 72909612 (+) False LOC110530508
XM_021613653.2 mRNA upstream 41590 72901627 ~ 72909612 (+) True LOC110530508
XM_036986156.1 mRNA upstream 78866 72779485 ~ 72872336 (+) False LOC110530507
XM_036986167.1 mRNA downstream 144838 73120829 ~ 73161313 (+) False mmp16b
XM_036986165.1 mRNA downstream 144840 73120831 ~ 73161313 (+) False mmp16b
XM_036986166.1 mRNA downstream 144841 73120832 ~ 73161313 (+) False mmp16b
XM_036986164.1 mRNA downstream 144846 73120837 ~ 73162119 (+) False mmp16b
LOC110530978 mRNA downstream 206179 73182170 ~ 73187819 (+) True LOC110530978
TU845309 other upstream 78898 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 82820 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 86499 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 308464 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 395646 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 273433 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 617646 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 743725 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1976694 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2038653 75014644 ~ 75033896 (+) False nedd8

Expression Profile