RNA id: XM_036986167.1


Basic Information

Item Value
RNA id XM_036986167.1
length 2440
RNA type mRNA
GC content 0.53
exon number 11
gene id mmp16b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73120829 ~ 73162119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACCCGCAAGGGACATTCTtctcatataatataatatgtttaTCTTCATGATACTGTTAATATGCCCGTTATTACATGACATTGTTATAACCGTTTAATAGTCTATACTTGAATGATATCGGGGATATTGAAGGATGATTGCTCCATCTGTCTCGGGCTATTTCTATTCTCACAGTACATAAAGAATTTTGTACCAGGGTACATTACATGACGTTGATCTTTACGCCGTCAAGTGGAGTGTTGCGCTGCTGGAGACATCATAGCGCAGGCGTAGACTCGGGGGGTATGCTTACTGTACATGGCCATTGATGCCGCTGGATAAACTAAATCAGCTATGTAAATAATAGTGACTGGGGCGGTGGAGCTAACATGCCGAATTCTATCACAGCCTAACATGAGAAAATAATACATGTCATCTGGGTTTACTTTATCCGGTTGAAAAAACCACCGCGGCCGTCCTTTTATGCACGTCTCGGAATTTGGCTTTGACAGCTCGCCCGATGGTTTTCTTCATTTGACGCACAAATAAAAATCAGACGACGGGCGGTTTTTCCTAATAACCCATTTGGGAAAAACGGGTCATTATGACCTTAGTATCCCCCTCTAAAAGAAAACCATTGGATTGCCTTTACGCAACAGCGTTCTGCTTGCATTTCTTGCTGTGGATTTTATGCGCCGCGTCCGGAGAAGAGATTCGTCAGTTCAGCGTTGAGGGATGGCTACAGAAGTATGGCTACCTTCCCCACACAGACCCCAGAATGGCTATCCTGCGTTCAGCCCAGACCATGCAACAAGCCATCGCAGCCATGCAGCGCATCTACGGCCTCAATGTTACAGGGACACTGGATGAGAGGACCACAGATTGGATGAAAAGGCCAAGGTGTGGGAACCCAGACAAACTAAAAGGCAACTCGAGGTCGCGGAAGCGGAGGTATGCACTGACGGGGCAGAAGTGGCAACGAACACATATCACTTACAGcaTAAAGAACGTCACTCCCAAAGTGGGCGCCAGGGAGACCCACGATGCCATCCGGCGTGCGTTTGATGTGTGGCAAGGGGTGACGCCGCTCCGCTTCGAGGCTGTCCCTTACAGCGCCCTGGAGAGCGGCCGTCGGGACGTGGACATCACCATCATCTTCGCCTCAGGTTTCCACGGTGACAGCTCACCCTTCGACGGCGAGGGGGGGTTCCTAGCCCACGCCTACTTCCCGGGCCCTGGGATTGGAGGGGACACCCACTTCGACTCAGACGAACCCTGGACCTTAGGGAACCCCAACCATGACGGTAATGACCTGTTCCTGGTGGCAGTCCATGAGCTGGGTCATGCCCTTGGCCTAGAGCACTCCAATGACCCCACAGCCATTATGGCTCCCTTCTATCAGTACATGGACACAGAGAACTTTAAACTACCTCACGATGACCTTCAGGGCATCCAGAAAATCTATGGTCCGCCAGACAGGTCCTCCCAGCCCACCAGAGCCCCACCCACGGCCCCTCCCCCACGCTTCCACCCCCCCTCGGAACCCCGTAAGCACGACCGCCAGGTCCGGCCCCACCGCCCTCCTCAGGGCGCAAAACCCTCCAACCCCAACGCCAATCCCAACATCTGTGACGGAGGCTTCAACACCCTGGCCATCCTCAGACAGGAGCTGTTCGTATTCAAGGACCAGTGGTTCTGGAGAGTGAGGGACAACTCGGTGGTCCCTGGCTACCCTATGGAGATCAACTTCTTCTGGAGAGGCCTGCCCGCCAAGATCGACGCCGTCTACGAAAACAGCGAGGGGAAGTTTGTCTTCTTCAAAGGAAACCGGTTCTGGGTGTTCAAGGACACTACTTTGCAGCCCACCTACCCTCAGGACATCTCTCTGTTTGGGAGTGGGATGCCCACCCAGAGTATAGAGACTGCTGTATGGTGGGAGGACGTAGCCAAGACATATTTCTTCAAGGGAGACAGATATTGGAGGTACAATGAAGACATGAGAAACATGGACCCTGGTTACCCCAAACCCATCACAGTGTGGAAGGGCATCCCTGACTCTCCTCAGGGAGCGTTTGTGGACAAGGCCAACGGATTCACCTACTTCTACAAGGGGAAGGAGTATTGGAAGTTCAACAACCAGCGGTTGCGTGTGGAGCCGGGCTACCCCCGCTCAATCCTGAGGGACTTCATGGGCTGTGACGGCCTACCAGCTGACCCCGACTGGGACTGGAGCCCTCCGGAGGTGGAGGAGCGCCACTACGACAGCAGCAGTGGTGACGTGGACATCATCATCAAGCTGGACAGCACGGGGGGCACGGAGAAGGCCGTGGCTATCGCCATCCCCTGTATCCTGGCGCTGTGCATGATGGTCCTACTCTACACCGTCTTCCAGTTCAGGAGGAAGAGCACGCAGAGACACATACTGTACTGCAAGCGCTCCATGCAGGAGTGGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845552 lncRNA upstream 16178 73063963 ~ 73104651 (+) True G744883
TU845514 lncRNA upstream 126892 72993518 ~ 72993937 (+) True G744849
TU845510 lncRNA upstream 133788 72984291 ~ 72987041 (+) True G744846
TU845464 lncRNA upstream 141706 72977456 ~ 72979123 (+) True G744800
TU845465 lncRNA upstream 156217 72964322 ~ 72964612 (+) True G744801
TU845729 lncRNA downstream 13868 73175181 ~ 73175535 (+) True G745050
TU845733 lncRNA downstream 19268 73180581 ~ 73182057 (+) True G745054
TU845741 lncRNA downstream 65911 73227224 ~ 73308294 (+) True G745061
TU845745 lncRNA downstream 66331 73227644 ~ 73228429 (+) True G745064
TU845804 lncRNA downstream 159967 73321280 ~ 73322029 (+) True G745122
XM_036986158.1 mRNA upstream 144838 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA upstream 144838 72951202 ~ 72975991 (+) False LOC110530509
XM_036986159.1 mRNA upstream 144838 72951203 ~ 72975991 (+) False LOC110530509
XM_036986160.1 mRNA upstream 144838 72951513 ~ 72975991 (+) False LOC110530509
XM_036986161.1 mRNA upstream 144838 72951847 ~ 72975991 (+) False LOC110530509
LOC110530978 mRNA downstream 20857 73182170 ~ 73187819 (+) True LOC110530978
XM_021613667.2 mRNA downstream 62858 73224171 ~ 73227167 (+) False samd13
XM_021613669.2 mRNA downstream 62946 73224259 ~ 73227167 (+) True samd13
XM_036986854.1 mRNA downstream 125938 73287251 ~ 73290541 (+) True LOC110530979
XM_021613673.2 mRNA downstream 152678 73313991 ~ 73320557 (+) False LOC110530519
TU845309 other upstream 248525 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 252447 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 256126 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 478091 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 565273 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 88111 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 432324 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 558403 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1791372 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1853331 75014644 ~ 75033896 (+) False nedd8

Expression Profile