RNA id: XM_021613667.2


Basic Information

Item Value
RNA id XM_021613667.2
length 1463
RNA type mRNA
GC content 0.39
exon number 4
gene id samd13
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73224171 ~ 73227167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATTAGTTTGAGGAGTTTAGGTGGTTTATAGATCGAATAAACTGCGCAGCGCCAGGCATACATTCGTGAATAAACAGGATATTCATTTACGCTGTCAGAAGAACTATCAACGAAGCcaactaataaacaataaaaagCTGGAATGGAGAACAAAACCAATGGATCAGTGGAAGCCAAGCCTAAGGTGGAGAATGGACAGCTGCCGGATCCTGCTGACTGGGCGGTTACTGATGTCGTTAACTATTTCAAAGCTGCAGGATTTGAAGAGCAGGCTACTGCTTTCCAGGACCAGGAAATCGATGGAAAGTCTTTGCTTCTGATGACGCGGAACGATGTCCTGACAGGCCTGTCCATCAAACTGGGGCCAGCACTGAAGATCTACGAGTACCATGTGAAGCCACTCCAGACCCAGCATCTGAAGAGTAATGCTAATGCATCATAGCATCACCCCATGCTCTTCCATGTGCAACAGGACAGTCATCTATGGAGGGTTGAGAGGCTGGACGGAGAGACCAGGCTGAAGACATTTATGGACAGCAGAAGATGGTGCTTAGAAAACGTATTTGCATCCTTATGCAATGTCAATGTACTTTTACTTGAAGTGATGACCGATGCCAAATGGTTTACGCCGTGAAATTAATTTACAAAAGACATGGCAGTGATCATACGGTTTTTAGTTAACTGAGTGATATTGGTTTATGAAAGTAAGGACTTGATTCCTTTATTTGAATACAATTATTTTACAGGTCTTAAAGTACACTGTAcaggtttattttatttttttctaagtTTGTTTCAAAATATTCTAATCAAGCATGCTACTGAAGCGGATTCAACCGAATTGGTTAATTTAGGAGACAGTCCTTTTCAGATGGACGCAAAGGTGCACTAGATGTCTGACCTGCTGATAAATGTCCTAACCTTGTCTTGATATTTTCATTATATACAAACTTTTGAACACGGTTTTGATTTCAGAAAAAAATGCATGGTAATTAATTTGAGGAAATGTGTTTGAAGCAGTCTTAGAATTACTGCTCCTCCATCACTGAATTTTTTCCCTAATGAGCCACTATGAATATTAGATGATCAAATCAGTATCTTTAAGCATCATGTACATCAATGATCTATTTAAAGTGATGCTCTGGGAACTCTGTATAATTTCAGCCtgtagttttgaaagtggtgctTACAAGTGGTGCTAACAAGCCAAAATGGGTCCCCGTTTTGTGTAGTTACAAATTTGTGCATAAGATCCCAGACTGCATATTTAAGCACTTGGGGGTGGGGAATATAGGTTAATAAGTGTTCTTTGATTTCCTTATTTACCATATTCTGTCATCTTAAAATGGTGGCTTTTTTTATTGATATGGATGTTTAATTAAAAGTAGTAGTCTTTCCCTTTTGTATTGTTAAGGTGCTCTGTTTGCATTCTGTTATGAAATAAACTACTTGCATCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845733 lncRNA upstream 42114 73180581 ~ 73182057 (+) True G745054
TU845729 lncRNA upstream 48636 73175181 ~ 73175535 (+) True G745050
TU845713 lncRNA upstream 73569 73150300 ~ 73150602 (+) True G745037
TU845712 lncRNA upstream 74594 73149239 ~ 73149577 (+) True G745036
TU845711 lncRNA upstream 75849 73148076 ~ 73148322 (+) True G745035
TU845741 lncRNA downstream 57 73227224 ~ 73308294 (+) True G745061
TU845745 lncRNA downstream 477 73227644 ~ 73228429 (+) True G745064
TU845804 lncRNA downstream 94113 73321280 ~ 73322029 (+) True G745122
TU845972 lncRNA downstream 137640 73364807 ~ 73365138 (+) True G745271
TU845979 lncRNA downstream 143214 73370381 ~ 73371047 (+) False G745278
LOC110530978 mRNA upstream 36352 73182170 ~ 73187819 (+) True LOC110530978
XM_036986164.1 mRNA upstream 62052 73120837 ~ 73162119 (+) False mmp16b
XM_036986167.1 mRNA upstream 62858 73120829 ~ 73161313 (+) False mmp16b
XM_036986165.1 mRNA upstream 62858 73120831 ~ 73161313 (+) False mmp16b
XM_036986166.1 mRNA upstream 62858 73120832 ~ 73161313 (+) False mmp16b
XM_036986854.1 mRNA downstream 60084 73287251 ~ 73290541 (+) True LOC110530979
XM_021613673.2 mRNA downstream 86824 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA downstream 87138 73314305 ~ 73320557 (+) True LOC110530519
XM_021613674.2 mRNA downstream 98000 73325167 ~ 73334834 (+) True LOC110530520
NM_001124624.1 mRNA downstream 158582 73385749 ~ 73391417 (+) True c8a
TU845309 other upstream 351867 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 355789 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 359468 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 581433 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 668615 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 22257 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 366470 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 492549 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1725518 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1787477 75014644 ~ 75033896 (+) False nedd8

Expression Profile