RNA id: XM_036986854.1


Basic Information

Item Value
RNA id XM_036986854.1
length 2533
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110530979
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73287251 ~ 73290541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGTAATTCACGCTGTAGTTAAGCCTACATTGTGTGCTCCGTGTCGTCTGGAATAATCAATCTAAAGGAGGCTTTTTATTTACTAAGGAAGATTAGAATACTATTTCTATAGACATGAATATGTTGATGCTTTCCTTTGTTTTTTTCCTTTATGGGAGTTTTACTTCGGtaagaaaatatatattaattaattaatcgTAACCTACAATTAAAATCCGTGCTTGATTGTCAATGCCGAGGGTGGGTGATGGTGATTAATTCAGATAGTCCTCACTCCATTTTACAGTACAGTATTTGTAGAATAAATAACATAAATGAAGTAAACATTTGTAGAAGTAATAACATGAATGAAGTGAACATTAATTTATCTTATaacatgtttttgttattttagGCATCTGCATCTTGTCCCTCCGAATGTTCGTGTCCTCCTGAGTTAGCCAGGTCTGCTCCAGGAATCAGCCTCGTGCCAGACGGCTGTGGATGCTGCAAAGCTTGCATGAGGCAGCTTAATGAGGACTGCAGCAAGACAGAGCCATGCGACCACATCAAGGGACTGGAGTGCAACTTTGGGGCTGGTTATGGCACAGCTAAAGGCATCTGTCGAGCCAAATCAGATGGAAGACCCTGTGAGTACAACAGCAAGATCTACCAGAATGGAGAGAGCTTCACTGCCAACTGCAAGCACCAGTGTACATGCATGGATGGTGCCTTGGGGTGTGTGTCCCTGTGCCCCCAGCAGCTCTCCCTGCCCAAACTGGGCTGTGCCATATCCAAGCTGGTCAAAGTGCCCGGTCACTGCTTTGAGGAGCTGGTCTGCCCTGAGGAGAAGGGGAAAGTCTCAGTGGACAAGAAGGTCAGCAAAGATGGCCGCAAGGATAAGCATTCTGATGATGACTTCACAAAGAGAAACGAGCTGGTGTCTTTCATCAGAGGAGGACTCAAGTCTTTAGCTGCTTTCAGGAGTAAGCCTGAGAGTCGCTTGATGTCCAAGGGGAACAGGAGGTGTGTGGCTCAGACCACAGCCTGGTCCCCCTGCTCTAAGTCCTGTGGTACAGGAGTTTCCTCCAGGGTCTccaacaacaacagccagtgCAAGCTGGTGAAGGTGACTCGTCTCTGTGAGGTCCGCCCATGCTCCCAGTCATCCTACTCATTCCTGAAGAAGGGTAAGAAGTGTAGTCGCATTGCGAAGGCCAGCCGTCCAGTGACGCTGAGGTATGCAGGCTGCAGCAGCGTGAAGAAGTTCCACTCCAGGTACTGTGGTTCTTGTCTGGACGGGCGCTGCTGCACCCCTCAGCAGACCCAGACTGTGGCCGTTCGCTTCCGCTGTGAGGATGGAGACACTTTCAGCAAAGACGTCATGGTCATAGAGTCCTGTTCATGTGACTTTAGCTGTTCCCATAACAACAAGAAGCTCTCTGGGCTCTCCAATGATATCCGCGAATCCAGAGTCTGAGGGGAAGGTTTAGGGTTCCACACCCTGTATGTAAACTAGGATTACAAAGGGGTGAGATGACGGGGAGTAAGAATAACTCCATATGTGCACTGCTATGCTGGAGACATTTATTTTgaggatttttttaaatgaattctTCGTAATATTGGAGTTATTGGCTGCTTCGATATGGAGCGTTTTATGTTGTAATATTTCTGTTCAATGACAACTTGTTTTGTATGCATGGCTATCTTTTTGTGTTTATTTGTAAATATGAAAACATCTGCTTCGTGGCAGCTACTAGAATGATTTAATCACGAGTAGATTTGTCAAACAAGTGCCATTGTTTTTAATACCACaacattatttgtatttatttctaaAATCTTGACGTTTTCTTAAGATATGAGAGGCCATATTGGAAAATCATGTTTTCGaccatttgtttttttaatgttattTATAAAATGTATGTACTTATGGAACCTGATGCTCTGTTGTGAATGCCTAGATATCACAGTATGGACAGTTGATATTTAACCTAGTTTTATTGGCATTGCTTTCTCTAGTTTAATCTATCCTCCACCCATAGTTATTTTAGAGTAAGGGATACCTGCTGTGTTTCTGGCTGACCCACTTCTGAGGGGATCTAGAGTTGAATGTATggctcaaatatatatatatatatatctaatcTAGTAGTTCATTGTGTTTGTGGGTCCTCTAATCCAGCTCCTACATTTCATTCAGTCTGCACAAACATCAACTCATCATAAAACCTCTAAATACATCCAAGTCTATTTTCATACAGTAAGTGTCTTTAACCTGATCTGTGGGCCATGATCTGCAACGGTAGTGGAGATCTCTGTTAATGTTGTACATATATTAGAGGGTTTTATGTGGTTTTTGATAAGTCATTGAGTTGTTGATTGGATATGCCTGGTTGTTTTTACCCACTTAGTTGCAGGACAGTTGGTGGGTTGGCTTGTCTGTTTTGGCTAGCTAATGTTTGCATTTAAAATATGCATCTCCGCACCTGtcacctgatatagaggtcctggatggcagggagctcagccccagtgacgTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845745 lncRNA upstream 58822 73227644 ~ 73228429 (+) True G745064
TU845733 lncRNA upstream 105194 73180581 ~ 73182057 (+) True G745054
TU845729 lncRNA upstream 111716 73175181 ~ 73175535 (+) True G745050
TU845713 lncRNA upstream 136649 73150300 ~ 73150602 (+) True G745037
TU845712 lncRNA upstream 137674 73149239 ~ 73149577 (+) True G745036
TU845804 lncRNA downstream 30739 73321280 ~ 73322029 (+) True G745122
TU845972 lncRNA downstream 74266 73364807 ~ 73365138 (+) True G745271
TU845979 lncRNA downstream 79840 73370381 ~ 73371047 (+) False G745278
TU845980 lncRNA downstream 79840 73370381 ~ 73372607 (+) True G745278
TU845988 lncRNA downstream 92004 73382545 ~ 73382755 (+) True G745286
XM_021613667.2 mRNA upstream 60084 73224171 ~ 73227167 (+) False samd13
XM_021613669.2 mRNA upstream 60084 73224259 ~ 73227167 (+) True samd13
LOC110530978 mRNA upstream 99432 73182170 ~ 73187819 (+) True LOC110530978
XM_036986164.1 mRNA upstream 125132 73120837 ~ 73162119 (+) False mmp16b
XM_036986167.1 mRNA upstream 125938 73120829 ~ 73161313 (+) False mmp16b
XM_021613673.2 mRNA downstream 23450 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA downstream 23764 73314305 ~ 73320557 (+) True LOC110530519
XM_021613674.2 mRNA downstream 34626 73325167 ~ 73334834 (+) True LOC110530520
NM_001124624.1 mRNA downstream 95208 73385749 ~ 73391417 (+) True c8a
XM_021613688.2 mRNA downstream 401759 73692300 ~ 73696186 (+) True LOC110530527
TU845764 other upstream 36755 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 414947 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 418869 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 422548 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 644513 72634884 ~ 72642738 (+) True LOC110530502
TU846133 other downstream 303096 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 429175 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1662144 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1724103 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1732623 75023164 ~ 75033896 (+) False nedd8

Expression Profile