RNA id: NM_001124624.1


Basic Information

Item Value
RNA id NM_001124624.1
length 2029
RNA type mRNA
GC content 0.50
exon number 11
gene id c8a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73385749 ~ 73391417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGCTTAACATGAGCTCattttcatcaaggagctcttTTATTTCTAATATGAATAGACTGATATGTGTATTATTGGGCTCCTACATTCTGCTGCTGGTTTTAAACAAATCTCCCACTGTAGATGCAACGGAGTACTCATGGAATATGGCTGAAACCAGAACAGGGCAATCTGCTATCAGGAGGGTCAGGAGTGTAAACAAACCAGCTCCTATCAACTGTAAGATGAAAATGTGGTCGTCATGGAGCCCTTGTGACTCCTGCACAGACAAGAAGTTTCGTTTCCGTTACATGGAGAAAGCGTCCCAGTTTGGTGGGAGACAATGTTTGGACAGTCAGTGGGAAGAGCTGGCATGCCCCACAGCACAGGCAGTGTGTTGGGAACCAGACATCTGTGGAGAAAGATTCACCTGCAATGCCACAGGTCGTTGTGTGAGCCAGGCGCTTCGCTGTAACGGTGAGGTCGACTGTGACGACGAGTCTGATGAGACGGACTGTGAGCAGGTGGACGACAGACAGGACAAGTGTTCCACACTACTACCCATCCCTGGAGCTGGCCGCGGCACTCAGGGCTTTAACATACTGACAGGAGAATTTGTGGACCACGTTCTTGACCCACAATACTATGGAGGACAGTGTGAATATGTCTACAATGGAGAATGGAGAAAACTCATCTATGATCCCTTCTGTGAGAATTTACATTATAACGAGGATGAGAAAAACTATCGTAAACCCTACAACTTCCATACATACCGCTTCATGGCCCAGGCTACTTCTGAAGGCTCCTCAGAGTATTATGAAGATATGGCCACATTACTGAAAGCCAGAAAGACGGAAGATTCTTTTAATCTGGGTGTTACTGTTGGGATTCAGTACGTGGAGTTTGGAGTATCAGGGAATGTGGAGTCTGCGTTACTAACAAATCTAACAAAATACACCAATCAGGAACTTGGCTTCATCAGGTTGCAGTCTAAGGTTCAGACGGCCCAGTTTAAGATGAGGAGCGAGGGGCTGATGCTTCATGAAGACATGTACCTGTCCCTCATGGAGCTTCCTGAGGAGAAGTATGACTTTGGCCTGTACTCCCGCTTCCTCAACACTTACGGAACGCACTACGTCACCCAGGGCATCATGGGAGGGACCCTGGAGTATGTGGCGGTCGTCAACACAACCGCCATGAAAACGTCTAAGATTGATGCGGAACAACTTAAAGGGTGTTTGGGTGGATCCATTGGCATAAGCAGTCCTATAGGCAAGACGAAGCAGGTAGAAGTTGGAGGCAAACTTGAAGTCAAAGGTTGCAAAGGCACTGGCTCTTATGAAAAAGAGATGTATGGCAGCTCCAGTTTGATCAAGGACATTGTGACGCTGGTGAAGGGGGGCAGTACAGGAAGTAGTGGGGGTCTGCTGGCCATCAAGGACCCTGACACATACAGGAAGTGGGGCCTTTCGCTCAAGTACAACCCAAATCTCATCGAGTTTGAGaCCCTGCCCATATTTGAGCTGGTGCGTCTGAGCACAGCGGGGGACCACGTGGGGGCACGGCCGGCCCACCTGAGGAGGGCGTGGGAGGAGTACCTGCTCCAGTTCAACTCCTGTCGCTGTGCTCCCTGCAGGCATGACGGCATCCCTGTCCTCTCCCAGACCTCCTGCCACTGCATCTGCAAGCAGGGCTTCAGAGGGGAAGCCTGCGAGGAAACCCTCAGGAAAGATTCCACGACGGACGGGGCCTGGAGTTGCTGGGGGGCGTGGTCTTCCTGTCAGTCAGGAAGTAAGACGCGCCGACGGTCATGTGACAACCCCCAGCCAGATGGGGGTGCCGCCTGCCTTGGCTCCTCCTCCCAGAACCAACGCTGTTGATGTCACCAGCCAGACGGGTCACAGCGCGGCAGGGGACACAGATTTCAAAACTACATCAGGAAGTAGGAGTGAATACCAATGATGTTCATTATGTTACCAACTCTGTATTTTTATCTGGCCAGAAAGATGAGGGTCAAAAAGTTTGTTCAGAAATAAAACAGTTCAAGATA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
K03997 C8A; complement component 8 subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845988 lncRNA upstream 2994 73382545 ~ 73382755 (+) True G745286
TU845980 lncRNA upstream 13142 73370381 ~ 73372607 (+) True G745278
TU845979 lncRNA upstream 14702 73370381 ~ 73371047 (+) False G745278
TU845972 lncRNA upstream 20611 73364807 ~ 73365138 (+) True G745271
TU845804 lncRNA upstream 63720 73321280 ~ 73322029 (+) True G745122
TU845994 lncRNA downstream 3474 73394891 ~ 73396418 (+) True G745291
TU846011 lncRNA downstream 5576 73396993 ~ 73397502 (+) True G745304
TU846013 lncRNA downstream 6491 73397908 ~ 73399962 (+) False G745305
TU846014 lncRNA downstream 6491 73397908 ~ 73399962 (+) True G745305
TU846037 lncRNA downstream 51307 73442724 ~ 73443676 (+) True G745325
XM_021613674.2 mRNA upstream 50915 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 65192 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 65192 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 95208 73287251 ~ 73290541 (+) True LOC110530979
XM_021613667.2 mRNA upstream 158582 73224171 ~ 73227167 (+) False samd13
XM_021613688.2 mRNA downstream 300883 73692300 ~ 73696186 (+) True LOC110530527
XR_002474545.2 mRNA downstream 310993 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 310993 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 314409 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 343410 73734827 ~ 73736698 (+) True LOC110530532
TU845764 other upstream 135253 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 513445 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 517367 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 521046 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 743011 72634884 ~ 72642738 (+) True LOC110530502
TU846133 other downstream 202220 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 328299 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1561268 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1623227 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1631747 75023164 ~ 75033896 (+) False nedd8

Expression Profile