RNA id: XM_021613688.2


Basic Information

Item Value
RNA id XM_021613688.2
length 2012
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110530527
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73692300 ~ 73696186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCCACTTGCAGCATGTTCTAACTCAGAGAACAACAGACAGTGACAAAAGACCAGGGACGAAGTCAGAAATAAAAGAGACCACGCAAAGAATTTAACAGGATATAAACCTGATCTCAGCTGAAAGGTTCCATCACAGGTCCTCTGATCcatcagaaagaaagaaagaaagaaagagaacaacTCCTGAAGGACCAAGAGAGTGATCCAGTCTGAGACCCAGGTGATCCATCCACCTGTCCTCCAGAATGTGGCTCCAGGTAACCTTGGGTCTGTCCTACCTGGTTCTGAGCTTCCAGAGCCAGGACAGCGCCTCCCTGAGACGCTCCAATGACCACACGGGGCGCTGTCAGTACACCTTCACCGTGGACAACCCTGCCGAGGCGAGCTGCTCCGGGACCAGCGAAGGACCAGATATGGAGGTGGTGAAATCTCGTCTCACCCTGCTAGAGGCCCTGGTCAGCAGGCTGCTGGGGGGcaagggagcagggggagagggtCCAGGGGGTGGGGGAGACAAGACCATCCAGGAAGCATACTCCCAGGCCATGAGAGATAAGAGCCAGCTGCAGGGGGACAAGGAGCAGCTGAACAGGCAGGTGCAGGAGCTCCAGAGGAGGGTGGACGAACTGAGACCCTGCCACCAGCACCAAGCCACTGGAGCAGGACTCCCACTTCACGAGCTCAACCAGAGACCAGCCAGCGACTCTCTCTATCAGGAGATGAAGGCAGAGGTGACTGAGGTCCCAGCATCACGTCTCATTCAAGACGCTGGGCAGAACCACACAGGCTGTGGTGAGCTGGTGTCTGTGGGAGAGCCCGTCCTGCACCGAAAGGCTGACAGCATCACAGGGAAGTACGGGGTGTGGCTGCAGGACCCTGAGCCCATGGCCTCTCCATACGGAAACAAGACGGTGTGGCGCATCGACACAGTGGGCACGGACGTCCGCCAGCTGTTCGCCTATGAGGACATGGAGCAGTTTGCCAAGGGCTTCCCCATGAAGGTTATGGTGCTGCCAGAGCCCGTGGAGAGCACAGGGGCCACCCTGTACCGTGGTTCCCTCTACTACCAGCGCCGACGCAGCCGCACCCTGCTCCGCTACGACCTTGCCTACGAGAGCCTGGCGGCACGCCTGGACCTCCCCCACGCTGGCTTCCACGGCCAGCACCCCTACTCCTGGGGCGGCTACACAGACATCGACCTGGCGGTGGACGAGCAGGGCCTGTGGGCCATCTACAGCACCAGCAAGGCCAAGGGAGCCATCGTGGTGTCCCAGCTGGACCCTGAGAGCCTGGAGGTGAAGAGGAGCTGGGAGACCAACATCAGGAAGAACACAGTGGCTAACTCCTTCATGATTTGCGGTCGGCTCTACACGGTGGCCAGCTACACCGCCCCAGACACCACCGTCAACCACGTGTTCGACACGGCCACCGGCCAGGGCAGAGTCATGGCGGTGCCCTTTAAGAACCACTACCGCTACAACAGCATGGTGGACTACAACCACGCCCAGAGGAAGCTCTATGCCTGGGACAACTTCCACATGATCACCTACGACGTCAGCTTGGGGAGACCCAGCAGAAGCAGCCAATAAGAGGAGGCTGGGCAGAGATGATGGACTGGTGTGGCGTGAACTCATACGCTGTTACTAGAATATTATCAACCAACAACATTACTAACAGCTTTATAATCAGATCACAGCGAGGCCTGTTGTCTACTACAATGCATTTTTTTTCTACTAATGTAAAtaagtgaatgaatgaatgaatcttACAATAAAATTAATGGCAGGAGATTCACTAAGGTGGAACTCCATGTAAACAGTCTGAGATATTGCTCTTCCTGTATTATATACGATGTATTTTacttattttaatttaaaaatgtactgtactgtccatgTTGAGTCTATATTCAAGTTGTATCTTCACTATTGTGTATTATATGGGCTCCAATTACCATTTGTATGTAATTTTATCTCTCAATAAATATTAAAATGATAGAGATCCCTAAA

Function

GO: NA

KEGG:

id description
K23027 MYOC; myocilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846130 lncRNA upstream 71300 73563836 ~ 73621000 (+) False G745407
TU846129 lncRNA upstream 71300 73569371 ~ 73621000 (+) False G745407
TU846128 lncRNA upstream 71300 73619226 ~ 73621000 (+) True G745407
TU846153 lncRNA upstream 84917 73606899 ~ 73607383 (+) True G745428
TU846151 lncRNA upstream 87871 73599984 ~ 73604429 (+) True G745426
TU846217 lncRNA downstream 6245 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA downstream 6245 73702431 ~ 73704416 (+) True LOC110530528
TU846238 lncRNA downstream 52967 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 54966 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 56258 73752444 ~ 73752723 (+) True G745500
NM_001124624.1 mRNA upstream 300883 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 357466 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 371743 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 371743 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 401759 73287251 ~ 73290541 (+) True LOC110530979
XR_002474545.2 mRNA downstream 6224 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 6224 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 9640 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 38641 73734827 ~ 73736698 (+) True LOC110530532
XM_021613693.2 mRNA downstream 57827 73754013 ~ 73761732 (+) True LOC110530531
TU846133 other upstream 97062 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 441804 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 819996 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 823918 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 827597 72862256 ~ 72864703 (+) True G744696
TU846223 other downstream 23530 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1256499 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1318458 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1326978 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1335744 75031930 ~ 75033896 (+) True nedd8

Expression Profile