RNA id: XR_005052949.1


Basic Information

Item Value
RNA id XR_005052949.1
length 1713
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110530528
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73702410 ~ 73704583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGGGCACACATGGCAGCCAGCGTGGCCAGATGGTTAACGGTTTGTCTACACTACCACACGGTAATGGATACGTGCGGTTTAGGCCCCCCCAGAGTAGCTCGCTTTTGGGTGTGCTGGAAGCATATGGCAGCACGTTCGATGTTGCGTCAAGAATTCATCATAGCAAGTTTGTATGAAAGTCTGGTTATTACATTTTATGAATTTATTCACAGGTACATTTTAAAGATGCTCTAAAACGCTCTGGTGACAAACAAACGTTTCTTCCCTGTTTCCAATCGTCCACATGGCTGGGATAACCTATTCAAAAGcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggtcctgggaaCTCAAAGGGATGCACGTTTCTGTTTCAACCTTAGCacgacacagctgattcaaatgatcaactcatcaagcttcaagtagtatttatgtattcatttgtgatgctatccttgatatgatcctgCTATTGTCACATGCTACACATGCATCTATCTATCCAATGTTATCATGATTTGTTATGAGGAATATTATACTTTAGTAATCCACAATGACCTGGTGATGTGAAAGTCTAATGACATTATCTTCCATATTCCTACAGATACCTTGTAACAGGACATTATTTCAAAACGATTGCCTACAGTTACCGTGTAGGGCACTGCAGGGTTGGGTGACCAGGGCCATCTGGGACTGCCTCCTGGGGGAATTCAGGCGTGTGAAGGCTACCTGTGTCCTGCATAATATAATGGACACGAGGACCAGGAGGGGATCTGCAACTCGCCACCATGTGCCATAGGAGAAGTCTGCTGCTCTTCAGGATGTTTCAAGGATGGGGTCCAACAATGCGGCAAGAGGCGAGAGATCTTCACCTCCTACTTCTTCGAAGGGTgtgctgttccctggcaacaccatagactacactatgaacaaccaaaggctcttttaagagccatccacattgcaataagagtattcttccatttgcttagctatgtcaactgcagttgttcaattcccagtttctctcccttttaatttctacttctcaggtgagggtgctgtttaggtaagggtgtgatgtctgtacaaaaacaaaacaggctaTTTTAAGTCTCCCATATTGAAAAGATGTAGAACAATTAGACACCCTATAACCCACACTTATGTATCAATCTGATTCATGGGTTGTGCAGTAAGCAGACTCAGGTGTATAACTGTGGCTCCTTCCACATTCaaagaataggcaagagggccaaccatggagaatagtaagacacttAATTATTTCTATAACTGCGCTATATTTTTTGTCCTCGTAAGTCTGCACGTTTTTCCAGCATGCATTACTctgcagccacttagtgtggacaccaggtgtggccacacacacagattcctgttgaacactTGTCTCTTTAACTACCTTATTTTCTCTAACAGTCTGAGAGATTATTAGGGTaacactgtaattcattaatcatataCTGTCTTCCCTGCTCCTCTGTTCTTTCCCTTTTACAGCTCTCTTGCCACCTCTTTCCTCCTGTTTTTATAATGCACAacagatgtgcattgaagtacagattgaacttgtatttataatattacaattatattTATAATGCATATATTATGTCATAACATTTGGATAAttaacttctttcaataaagcatttcacattctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846130 lncRNA upstream 81410 73563836 ~ 73621000 (+) False G745407
TU846238 lncRNA downstream 44570 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 46569 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 47861 73752444 ~ 73752723 (+) True G745500
TU846242 lncRNA downstream 49021 73753604 ~ 73753865 (+) True G745501
TU846254 lncRNA downstream 66324 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
XM_021613688.2 mRNA upstream 6224 73692300 ~ 73696186 (+) True LOC110530527
NM_001124624.1 mRNA upstream 310993 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 367576 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 381853 73313991 ~ 73320557 (+) False LOC110530519
XM_036986183.1 mRNA downstream 1243 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 30244 73734827 ~ 73736698 (+) True LOC110530532
XM_021613693.2 mRNA downstream 49430 73754013 ~ 73761732 (+) True LOC110530531
XM_036986184.1 mRNA downstream 66299 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613696.2 mRNA downstream 130247 73834830 ~ 73837375 (+) False LOC110530534
TU846133 other upstream 107172 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 451914 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 830106 72860408 ~ 72872304 (+) True LOC110530507
TU846223 other downstream 15133 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1248102 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1310061 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1318581 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1327347 75031930 ~ 75033896 (+) True nedd8

Expression Profile