RNA id: TU846218


Basic Information

Item Value
RNA id TU846218
length 1525
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110530528
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73702410 ~ 73704583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTGGCCAGATGGTTAACGGTTTGTCTACACTACCACACGGTAATGGATACGTGCGGTTTAGGCCCCCCCAGAGTAGCTCGCTTTTGGGTGTGCTGGAAGCATATGGCAGCACGTTCGATGTTGCGTCAAGAATTCATCATAGCAAGTTTGTATGAAAGTCTGGTTATTACATTTTATGAATTTATTCACAGGTACATTTTAAAGATGCTCTAAAACGCTCTGGTGACAAACAAACGTTTCTTCCCTGTTTCCAATCGTCCACATGGCTGGGATAACCTATTCAAAAGcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggtcctgggaaCTCAAAGGGATGCACGTTTCTGTTTCAACCTTAGCacgacacagctgattcaaatgatcaactcatcaagcttcaagtagtatttatgtattcatttgtgatgctatccttgatatgatcctgCTATTGTCACATGCTACACATGCATCTATCTATCCAATGTTATCATGATTTGTTATGAGGAATATTATACTTTAGTAATCCACAATGACCTGGTGATGTGAAAGTCTAATGACATTATCTTCCATATTCCTACAGATACCTTGTAACAGGACATTATTTCAAAACGATTGCCTACAGTTACCGTGTAGGGCACTGCAGGGTTGGGTGACCAGGGCCATCTGGGACTGCCTCCTGGGGGAATTCAGGCGTGTGAAGGCTACCTGTGTCCTGCATAATATAATGGACACGAGGACCAGGAGGGGATCTGCAACTCGCCACCATGTGCCATAGGAGAAGTCTGCTGCTCTTCAGGATGTTTCAAGGATGGGGTCCAACAATGCGGCAAGAGGCGAGAGATCTTCACCTCCTACTTCTTCGAAGGGTgtgctgttccctggcaacaccatagactacactatgaacaaccaaaggctcttttaagagccatccacattgcaataagagtattcttccatttgcttagctatgtcaactgcagttgttcaattcccagtttctctcccttttaatttctacttctcaggtgagggtgctgtttaggtaagggtgtgatgtctgtacaaaaacaaaacaggctaTTTTAAGTCTCCCATATTGAAAAGATGTAGAACAATTAGACACCCTATAACCCACACTTATGTATCAATCTGATTCATGGGTTGTGCAGTAAGCAGACTCAGGTGTATAACTGTGGCTCCTTCCACATTCaaagaataggcaagagggccaaccatggagaatagtaagacacttAATTATTTCTATAACTGCGCTATATTTTTTGTCCTCGTAAGTCTGCACGTTTTTCCAGCATGCATTACTctgcagccacttagtgtggacaccaggtgtggccacacacacagattcctgttgaacactTGTCTCTTTAACTACCTTATTTTCTCTAACAGTCTGAGAGATTATTAGGGTaacactgtaattcattaatcatataCTGTCTTCCCTGCTCCTCTGTTCTTTCCCTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846130 lncRNA upstream 81431 73563836 ~ 73621000 (+) False G745407
TU846238 lncRNA downstream 44737 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 46736 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 48028 73752444 ~ 73752723 (+) True G745500
TU846242 lncRNA downstream 49188 73753604 ~ 73753865 (+) True G745501
TU846254 lncRNA downstream 66491 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
XM_021613688.2 mRNA upstream 6245 73692300 ~ 73696186 (+) True LOC110530527
NM_001124624.1 mRNA upstream 311014 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 367597 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 381874 73313991 ~ 73320557 (+) False LOC110530519
XM_036986183.1 mRNA downstream 1410 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 30411 73734827 ~ 73736698 (+) True LOC110530532
XM_021613693.2 mRNA downstream 49597 73754013 ~ 73761732 (+) True LOC110530531
XM_036986184.1 mRNA downstream 66466 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613696.2 mRNA downstream 130414 73834830 ~ 73837375 (+) False LOC110530534
TU846133 other upstream 107193 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 451935 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 830127 72860408 ~ 72872304 (+) True LOC110530507
TU846223 other downstream 15300 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1248269 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1310228 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1318748 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1327514 75031930 ~ 75033896 (+) True nedd8

Expression Profile