RNA id: XM_021613694.2


Basic Information

Item Value
RNA id XM_021613694.2
length 1872
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110530532
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73734827 ~ 73736698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAGAAGTGGATAAAGTTCGTCTCCACGTTGGAAGTGGTAGAAACTACATTGTGTCGAGTCAGACACAGTATCTGCTTAAAGAAGAAAAACCTTATTTCAATAGGCGAATCGAATATTTTTTCAATCCTAATTGAAACAAAGACGCCTATCGATTGAGGAAGTaaagttattttgtttgtttgataCTATTGTTTTATAAAGTCTCAAGAAAAGTTTCCACATCGGACATCAGGAGTTGTCCTCCGAGTTGAAATTCGAAAACTACTTGTCCGAGGACTGTAAAAAGATTGGGGACATCAGATTGCAATTTATCACTCCATATTATTTATTGTAATTTCGACCTTTAATGTTTGGATTTTTATTCCAGCAATTATATTCGCGATAAAGGCCCGTCAATTGATGCCCACCAAGATGGAAGCTACATTATATGACGAATCTATAAATGGTCAGCAAGGCGCAGTGGGCGGATATCATGGGTTTAACCCGAAAACCCTGAAGCAGAGCATGACACTGAACCTCAACGACCCTAAAATGTTTAAACCTCATCTGCGGGCGAAAGCTATCGACATCCTGACATCCCCTGATGTGGGATTATTAAAACTGGCTTCCCCTGAATTGGAAAGGCTTATCATCCAGTCCTGCAATGGGCTGACGACTCCGACCCCAACTCAGTTCCTCTGTCCCAAGAACATCACCGACGAGCAAGAGGGTTTTGCCGAGGGATTCGTAAAGGCGCTCGCGGAGCTTCATTATCAACAGCATATGCCCAATGGCAGCTCTGACGCTCAAGCCAATGCTGCCAACAACATGGCACCCTCATCTACTGTGTCGGACAGTCCTATACCCTACAGCTGCACCGTGCGCCCCGACCCACCTGAATACACAAATTTGGGCACTTTCAGTCGGGCTGTCAGCTCTGCGTCGGCACTTAACGGCGACAGACACTCCTCCGCTAGTTACACGGCCGTCCCGTCCCAAACCCACATCGAGCCCCAGCGGCCACCCCAGCATCCACGGCTACAGCATGCTCGGCTACAGTCATTCAAAGAGGAGCCCCAGACGGTGCCCGAGATGAGCGGCGATACCCCTCCGCTGTCGCCTATCGACATGGAGAGCCAGGAGCGGATAAAAGCCGAGAGAAAGCGCTTGAGAAACAGGGTGGCCGCGTCCAAATGCCGGAAAAGGAAGCTGGAGAGGATCTCGAGGCTGGAGGACAGGGTCAAAAACTTGAAGACCCAACACACAGAGTTGGTCTCCTCTGCCAACGTGCTCCGGGACGAACTGGCACTGCTCAAACAGAAGGTCATGGACCACGTTAACAGCGGGTGCCAACTCATATTGACGCAGCAGCTCCAGGCGTTCTGAACGGCCAAATACTGCGCTTTGAGCGAGAGACATTTCATTGTGGGACCAAACGCAGCTCCTAGAGGCGTGATACATTACTTCGTCTTTGCGCCTGACAGAGTGGGGACAATATACACTTATTCGTGGAATAATTAGGCTAGTGGTGGCCAAGGCCAACAAACAGTGCCAGTGCCTGTTGTCCTATGAATTGTCTAGTATGTAAATAGTCGAGCACTGAGTTTTCTCACCAGCAACAAGTTGTACAATGTAACACTATATGAGACATTGCGTTATTGACACACCTTGTGAAAGGACTGACTCACAGGTGTGTGTAGGCTAGGCTACTAGGACTGATACAACTTCCTTACTTTCTTAACATTTACACATTAATACCATTTTGTGAAAGGGGTATAACAAATGTTAGATCTGAATTAATACTTTATCATAACTGTTTTTATGCCTATTATGCGAAATGTATGTATAAACGACAAAATATAACGTGGAATAAAACTTCTCATTAAGGATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846217 lncRNA upstream 30411 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA upstream 30411 73702431 ~ 73704416 (+) True LOC110530528
TU846128 lncRNA upstream 113827 73619226 ~ 73621000 (+) True G745407
TU846153 lncRNA upstream 127444 73606899 ~ 73607383 (+) True G745428
TU846151 lncRNA upstream 130398 73599984 ~ 73604429 (+) True G745426
TU846238 lncRNA downstream 12455 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 14454 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 15746 73752444 ~ 73752723 (+) True G745500
TU846242 lncRNA downstream 16906 73753604 ~ 73753865 (+) True G745501
TU846254 lncRNA downstream 34209 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
XM_036986183.1 mRNA upstream 15565 73705826 ~ 73719262 (+) True LOC110530529
XR_002474545.2 mRNA upstream 30244 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA upstream 30244 73702410 ~ 73704583 (+) False LOC110530528
XM_021613688.2 mRNA upstream 38641 73692300 ~ 73696186 (+) True LOC110530527
NM_001124624.1 mRNA upstream 343410 73385749 ~ 73391417 (+) True c8a
XM_021613693.2 mRNA downstream 17315 73754013 ~ 73761732 (+) True LOC110530531
XM_036986184.1 mRNA downstream 34184 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613696.2 mRNA downstream 98132 73834830 ~ 73837375 (+) False LOC110530534
XM_036986189.1 mRNA downstream 98194 73834892 ~ 73837375 (+) True LOC110530534
XR_005052951.1 mRNA downstream 107950 73844648 ~ 73859462 (+) False LOC110530535
TU846223 other upstream 14177 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 139589 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 484331 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 862523 72860408 ~ 72872304 (+) True LOC110530507
TU846883 other downstream 1215987 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1277946 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1286466 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1295232 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1591074 75327772 ~ 75328195 (+) True G746936

Expression Profile