RNA id: XM_036986184.1


Basic Information

Item Value
RNA id XM_036986184.1
length 3260
RNA type mRNA
GC content 0.52
exon number 14
gene id si:ch1073-82l19.1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73770882 ~ 73793820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGATCAACTATTTCTATGGGTTCTACATCGTGGAGCTCTGGAGTTACACACCGTTAACTATCGATCAACTGCTGTCGCTGTATCAACATTCAACAGTAATTTGACTAGCAGTAGACACTGTACTTTATAGCTTGATTTTTACCAATGTCAAAAGAACGGAATATACATGTGCATATCCACGACAGAAGATAGTCTTGCAATTTGAACCACAATGCTTGTTCTCAAAGTCATTTGATATTGCAAAGTGATGggaaatatttatatttaaaaagaAAAATGGCTGAGTCCTGTCCCGTGGCCCTGTCTGAGCTGTGTCTGGCCCAGGTGTGTCTCAGCCTGGACTCCCTCTGCAGTACGCAACCAGATGGCTCCCTGAGGCTCAGCTGGGCCCCACTGCTCCCACAGGAAATGGCGGATCAGCTACTGCACAAGATGGCTGCCCAGGGCACGCTAAACGACAGAACAGTCGGTATCTTCCGCAGCTGTGAACAACTCCGTCTGCGCAGAGCTTGTGTccgctcctcccccctctctgcaGAGGCCTTCCGTCTGGCCCTCTGCCCTCACCGGCTGCAGGAGCTGGATGCTTCTGGGGTCCCTGGGGGCCTCACTGGTGCCCACATCCTCTCAGGCCTGGCCTCCAACCCGGAGTGCAGAGCCAGCCTGCAGAGGCTCACACTGAGCAGGCTCCAGTTGGGCTGGACGTCCCTggaggtgaaggaagagcagGTAGGCTTCAGCTCTCTGCAGGGCCTGAGGACACTTAACCTGGCCAACACAGACCTCACAGACCCCTTCCTGGAGGACATCTGTACTCTCCCACAGCTAGAGGTCCTGGACATCTCCAGCACCCCCGTCACGGAGCTGAGCGCCCTGCTGGGTTGCCGGCTTACCCTGAGATCCCTGACTGCCCACGGGCTGAGGCAGCTGGACATGTCACCCGCCAGAGTGATCTCCATCCTTAGCCAGCTCCACGCCCTCAGGCACCTGGACCTCTCTGACGACCGCTTCGTCTCTGCACCACCATCCGCAGAGAATGacgaagggggggagggggatgaAGCGGTGAGACTGCTTCTGGAGGGGGGTTCTGGGATTCTCCCAGCACTTGTGTCTCTGGATGTGTCTGGAAGGAAGAAGGTGACTGAAGGGGCGGTCACTGCCTTCGTCGAAGGGAGGAGAGGGCTTTTGTTCCTGGGGCTTCTGGCTACTGGGGCTGGCTCCTGTGACGTTCTGTCTGGGAAGAATAACTTAAAGGTGACCGGCGAGGCCAATGAGAAGCAGATCTGTGAATCTCTgaggaggtacagagagagagagtgtttcaCACGCGAGGCCCTGGTCCATCTCTACCAGCTGACTAACGACATGtacaaccagaccagaccagacatccTGAAGCTGGTGTTGGGAGGGATGCAGAACTACTCAGAGTCTCTCCATGTCCAGCTGGTGGCCTCAGCCTGCGTCTTCAACCTGACCAATCAAGACATGGCTGTGGGCATGCCCCACCCCCTGCTCAGCGCAGTTGTGCATCAGGTGCTGGAAGCCATGAGAAGCTTCCCCAGCCACCAACAGTTACAGAAGAACTGCCTGCTGGTGCTCTGCAGTGACACCATCCTTCAGGACGTCCCTTTTGACAGGTTCGAAGCAGCCAAGCTGGTGATGAACTGGCTCAGCGGTCACGTGGACCGGACCCTGCAGAGGATGGCTGTGGCCGTCATCTCCATACTAGTGGCCAAACTGTCTACAGAGCAGACCACACAGCTGGGGGCTGATATATTTATTATGAAGCAGCTGCTGGGTATAGTGCAACAGAAAGCCATGGCAGGAGTAGTGGACTCCACTCTGAAGTTTGCCCTGAGTGCTCTGTGGAACCTGACTGATGAGACACCCACTGCCTCGCGACACTTCATCCAGTGTCAGGGCCTGGAGCTGTACGAGGAGGTGCTGAAGACCTACTCTTCTGAATCTTCTATACAGCAGAAAGTTCTAGGTCTTCTGAACAACATAGCAGAGGTAGAAGAGCTGCAGGCAGACATGATGCAGGAGGACCTGTTGGAGCATGTAGTGACCCTGCTCCAGGGGCCCCAGGTGGAGGTGGGGATCAGCTACTTTGCTGGGGGCATCCTGGCCCACCTCACCTCCAGACAGGATGCATGGACCCTAGACCAGGGGCTCCGACAAACCATACTGGAACagctgCATGCTGCCATACTGACCTGGGCCCTCCCTGAGCGTGAGATGGTGTCCTACAGgTCGTTTCGGCCGTTCTTCTCCTTGCTTCAGACCTCTCAGCCTGCTGGAGTGCAGCTATGGGCTGTCTGGGCTATGCATCTCGTCTGCACTCAGAacgGTGTGCAGTACTGCCAAATGCTCCAGGTGGAGGGGGCAGTGGAACTCCTAAAGACATTGTCCTCTGACCTTGACACCCACAGCAATGTCAGAGGGATGGCAGAGAGCATCCTGGGTATGGTGGAGCGCCACCAGACCACCAGCAATCCCCTGAGAACACAGACAGAAAAGGGACATCATGGGAGGTCATGATGGATCTGTGACCCTTGACCCCTTAGTCACAGGTGTGTTAAAATATGAATGGGATAGCTGACATCTCTTTATGTGTACAGTCTACTATGTCTTTTTTAGTAGTTGCATTGGTGGGAATTAGGAAAATAAATATGAATATATTTGTTAAATGCTCAGAAAGACACTTTGACATCAGACTCCTCAATACCTAGCTGTAGAAATAATTTTTCAACAACAACATTCTAAAATATCATTGGAGTTGTTCTAGAAGTAAGTGACCTGGATAACTGCATAGTTGCTGCTTTTAAAAAGAATAGCAGAGCTATTTTTAGTCGATAATTAAAACAACTTTCAAAGAGACTAGAATAATCAGCTCTCCTAATTAAACAGGAATGTATCAACAAActggtgtactgtgtgtgtttggagtTTAAAATACAATCTCTGTCACCAGAGGGCTCTGATGTGCTGCATATAtactgatgtatataaaccctggattgctgatacAACATTTgcgtaacaagtcacataatgaggtgcatggactcattctgtgtgcaataatagtgtttaacattatttttgaatgactacatcaTCTCTGTGCCCCACACATACAAATATCTGTACGGTCCCTCAGTCGAGGAGTGAATTtcacacagattcaaccacaaagaccagggaggttttccaatgcctctcaaagaagggcatctattggtaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846242 lncRNA upstream 17017 73753604 ~ 73753865 (+) True G745501
TU846241 lncRNA upstream 18159 73752444 ~ 73752723 (+) True G745500
TU846240 lncRNA upstream 19420 73751152 ~ 73751462 (+) True G745499
TU846238 lncRNA upstream 21301 73749153 ~ 73749581 (+) True G745497
TU846218 lncRNA upstream 66466 73702431 ~ 73704416 (+) True LOC110530528
TU846277 lncRNA downstream 16143 73809963 ~ 73811422 (+) True G745534
TU846304 lncRNA downstream 76610 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA downstream 82478 73876298 ~ 73882450 (+) True G745557
TU846316 lncRNA downstream 97818 73891638 ~ 73892041 (+) True G745568
TU846344 lncRNA downstream 139675 73933495 ~ 73933754 (+) True G745594
XM_021613693.2 mRNA upstream 9150 73754013 ~ 73761732 (+) True LOC110530531
XM_021613694.2 mRNA upstream 34184 73734827 ~ 73736698 (+) True LOC110530532
XM_036986183.1 mRNA upstream 51620 73705826 ~ 73719262 (+) True LOC110530529
XR_002474545.2 mRNA upstream 66299 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA upstream 66299 73702410 ~ 73704583 (+) False LOC110530528
XM_021613696.2 mRNA downstream 41010 73834830 ~ 73837375 (+) False LOC110530534
XM_036986189.1 mRNA downstream 41072 73834892 ~ 73837375 (+) True LOC110530534
XR_005052951.1 mRNA downstream 50828 73844648 ~ 73859462 (+) False LOC110530535
XM_036986191.1 mRNA downstream 50828 73844648 ~ 73860271 (+) False LOC110530535
XR_005052950.1 mRNA downstream 50828 73844648 ~ 73861169 (+) False LOC110530535
TU846223 other upstream 50232 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 175644 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 520386 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 902500 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 906179 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1158865 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1220824 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1229344 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1238110 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1533952 75327772 ~ 75328195 (+) True G746936

Expression Profile