RNA id: XM_021613696.2



Basic Information


Item Value
RNA id XM_021613696.2
length 1183
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110530534
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73834830 ~ 73837375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGGGAGGCACCACGCCTCTTCTGTGTGTTTAAATAGGACTGACTCCCTTACGAGTTGACGACACAGGATTACTGACTGACAACAGACGGACCACTTTCAATTGCGAACATTATTCAGATCGTCATTAACAGCAGGAGATCAGTGCCAGAATGGTTGTGCTGTCTAAAGAATATGGGTATGTGGTTCTCACTGGTGTTGCCAGCATGGTCATGGTTGCCCACCTTGCTGTGAAAGTTGGCAAAGCTCGCAAGAAGTACAAGATCAATTACCCTCAGATGTACAGCAATGATCCAGACTCTGGAAATATCTTCAACTGCATCCAGCGAGCCCATCAGAACACcctggagagctaccctgttTTCCTCTTCAGTCTGGCCATTGGTGGTCTGCATAGTCCTCGCCTAGTCAGTGGACTTGGAATGACATGGGTTATAAGCAGGGAGATCTATGCATACGGATACTCCACTGGAGATCCTAAAAAAAGGATGCCGGGGTTATCCGGGAACATTGCTCTGCTGGGCATGATTCTGACCGTAGCCAACTTTGGCAGAACCCTGTTAGGCTGTGGTGACTGGGTGAGGCCTGGGATGAGACCAGGATGAGGTTCTCAGCTCCCTTTCCAGCTGCCATTCCTGCTACCATTCCTCAGTGAGAAGCACTGCAACCCCACCTGACCCCAGTCTATTAGTAGTTGTAGGATGTCCTTTGTGGGCATCCGTACTTGTGTATGATATGTACAGACAGAGTTCAGTAAACATTTGGAAAGAGATGACCACGACTGTTAGTTTATCATTCCATAACTACCACACCACGCCAACTCCTCCCAGACCCCCTCCTCAACACTGATAGGCCCAGATTAGCTGTTCATGGTGCTTCACCAGCTACTCTTTGTTAGAGTGTGGACTTTTTTATGCATAATGTTGCCAAAACTGTattccacaggaggttggtggcaccttcattggagaGGACAGGCTCGtgttaatggctggagcagaatgatttggaatggcatcaaacacagtTTCCAGGTGTTTTATGCCATTCCATTATCTCCATACCTGCCATAATTAGGATCTGTCCTAACCGTAGCATCCTCCTGTGCTGTATTCTAAATGAAATTCTAATGTAGAAAATGACCATGGAAAATGGGCTTAAATAACATTTCTAGGTTCTATCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846277 lncRNA upstream 23408 73809963 ~ 73811422 (+) True G745534
TU846254 lncRNA upstream 62978 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846242 lncRNA upstream 80965 73753604 ~ 73753865 (+) True G745501
TU846241 lncRNA upstream 82107 73752444 ~ 73752723 (+) True G745500
TU846240 lncRNA upstream 83368 73751152 ~ 73751462 (+) True G745499
TU846304 lncRNA downstream 33055 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA downstream 38923 73876298 ~ 73882450 (+) True G745557
TU846316 lncRNA downstream 54263 73891638 ~ 73892041 (+) True G745568
TU846344 lncRNA downstream 96120 73933495 ~ 73933754 (+) True G745594
TU846345 lncRNA downstream 97933 73935308 ~ 73935597 (+) True G745595
XM_036986184.1 mRNA upstream 41010 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613693.2 mRNA upstream 73098 73754013 ~ 73761732 (+) True LOC110530531
XM_021613694.2 mRNA upstream 98132 73734827 ~ 73736698 (+) True LOC110530532
XM_036986183.1 mRNA upstream 115568 73705826 ~ 73719262 (+) True LOC110530529
XR_002474545.2 mRNA upstream 130247 73702410 ~ 73704583 (+) False LOC110530528
XR_005052951.1 mRNA downstream 7273 73844648 ~ 73859462 (+) False LOC110530535
XM_036986191.1 mRNA downstream 7273 73844648 ~ 73860271 (+) False LOC110530535
XR_005052950.1 mRNA downstream 7273 73844648 ~ 73861169 (+) False LOC110530535
XR_002474546.2 mRNA downstream 7273 73844648 ~ 73861256 (+) False LOC110530535
XM_021613698.2 mRNA downstream 7274 73844649 ~ 73862206 (+) False LOC110530535
TU846223 other upstream 114180 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 239592 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 584334 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 966448 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 970127 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1115310 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1177269 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1185789 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1194555 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1490397 75327772 ~ 75328195 (+) True G746936

Expression Profile