RNA id: XR_005052951.1


Basic Information

Item Value
RNA id XR_005052951.1
length 2835
RNA type mRNA
GC content 0.56
exon number 19
gene id LOC110530535
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73844648 ~ 73862206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATACGTTGCTAGACCTCTGGTTTGTGGTCAGCACTACGGTCAGCACAGGTGTCAGTCACAAAAGGACAATGAATGCTGAATCCGTTAACGACAACTAACTTTTAACAAGTAGCAGGCTGGCCTTCTGCCAGGGGCCGCCTCTGTTCATCAACAGCACTGTCTGATAGTGGGAGACTTATTAAAGCCCAGGATCGCAGGCAGCAAGCGCAAAAATCTAAGAGCGGACATTAAAAGAAGTGTTCCCATTATAAAGCTTGTCATCTACGGGATGGAGCCCCCTGACAGCTCCGTGCAGAGCCCCGACTTCGTGTCCTTAGAATTAACGGTGGAAAACGTCGAAAAAgcCCTCCAGCAACTGTACTATGACCCGGACATGGAGCATAAGAATGTGGCCCAGAAGTGGCTGACTCAGGCCCAGACCTCCCGTCAGGCCTGGCAGTTCTGCTGGCCTCTGCTCAGCCCAGACAAGCTTCCTGAGATCCAGTTCTTTGGCGCCAGCACCCTTCACACCAAGATCTCCTGTCACTGGGCCGACCTCCCCACAGACCAACACCAGACACTGAGGATGCAGCTCCTTTCCCACATCTCCCACTTCTCCTCTGGGCCAAAGATGGTGCTGACCAGGCTGTGTGTGGCCCTGGCCTCCCTGGCCCTCCACACCATGCCCCAGGGTTGGCCCCAGGCTGTGGCTGACATGGTCAGGGTCTACCAGCCAGAAAAGGCTGGGGATCAGGGCGGAAGTCAGGGTGGGGCTGGGGTTGGTGGAGGAGGTGGGGCAGAGGAGGAAGTGAACGCCCACGCACACTGCCTGGCCCTGCTGGAGCTCCTCACCGTGCTGCCAGAAGAATTCCAGAGCTGCCGGCTGCCCCAGGCCCGTCGTGCCCAGCTGAGAGAGGCCCTGGCTGGGGAGTGGACGGCGGTATGTCCCCTGCTGCGCCAGCTGCTCCAGAGACAGGAGGGCAACAGCCAGGTGAAGGAGCGGGCCCTACGGTGCTTGTCTAGCTGGGTGGGACTGGATGTTCCTCTGCATGGGGAGAGCGAGGGGCTgctgcaggactgttttgctgcTCTGTCAGACCCAGAGCTGTTTGACACTGCCGTGGAGACCATTGTCAGCTCTATATCCCAACCTGACTGCCAGAGATACACTGATGCTCTGGTGAACTTGATGCCCCTGGTGCTGGGTCTCCATGACCAGCTGAAAGCCGCAGCGAGGGACGGAGACATGGAGACCTCCCATGGTATCTGTCGCATCGCTGTCGCTCTGGGGGAAACACACTCCAGGACTCTTCTGGAACAGGTGGAACACTGGCAGGGATACCTAGCCCTAGTCAAAATGATCCTGTTCTGTACTGGCATCCCTGGGCACTACCCAGTCAACGAGACCACCAGCTCCCTCACACTCACCTTCTGGTACACTCTGCAGGATGACATCCTGTCATTTGAGGAGGACAAGCAGGTAGTTTACCTGCAGGTCTACAGACCAGTCTACTTCCAGCTGGTGGACGTTCTGCTCCACAAGGCCCACTTCCCCTCAGAGCAGGACTATACTTCCTGGTCCTCAGATGACAAGGAGCAGTTCAGGATCTACAGAGTCGACATATCAGACACTCTGATGTATGTGTACGAGATCCTGGGGGCGGAGCTTCTCAGTAACCTCTATGATAGACTGGGCCGACTGCTGATGGACACGGAGAGACCGACAGCATGGCAGGACACTGAGGCCCTTCTCTTTGGCTTCCAGGCTATAGCAGAGACCATAGACGTCAACTACTCTGATGTCATCCCAGGCCTCATCGGTCTGATCCCACGGATCAGTATAAGCAACATTCAGCTAGCTGACACCGTCATGTACACTATAGGTTCTCTAGCGGAGTGGCTGGCGGACCATCCGATGATGTTAGGCAATGTATTACCAATGGTGCTCCAGGGCTTGGTGAAGGCTGAGCTGTCCGTGTCCAGCGTGTCCACTCTGAAGAGAATTTGCAGAGAGTGTCGTCACGACCTCGCCCCTTACATCCATGACATCATGACCGTGTCACAGGACGTACTGGTCAAAGATATCCACAAGAGCAGCCAGTGCATGTGGCTGATGCAGGGCCTGGGCTTCCTACTCTCTGCCTTGCCAATGGAGGAGATCCTGGGCAGCCTGACCACCCTCCTCACCCCCCACATCCAGAGGCTAGACACCCTGGCACACCAGGAGCCCAGCCCCACTGCCAAGCTGTCTATCATCCACATCCTGGGTATGCTGTCCAGTCTGTTCACTACGCTGGACATCAGCAGGCAGGACGAGGGGTCAGAGGGCACCACCCCAGCTCAGGCCAGGCCCAACCCAGTGGTGGTGGTCTTACAGCAGGTCTTCACATTGATCCAGACCATCCTCAgcaagtggctcagtgactcagaAGTGGTGGAGGCAGTGTGTGGGGTGTTTGAGAGGTCCGTAAAGACCCTCCTCAATGACTTTGCTCCCATGGTACAACAGCTCAGTGAGATGCTGGGACAGATCTACAGCGCCTTCCCACAAGCCTCTGCTCTCGACCTCACACGCCAGGTGAGAAAGATCATTTCAGCCCCATCCAGGCCCTTATTGAGCTGGTCACATCCACCACCCTCTCTATCTTCCAGCAAGGCCCAAGGGAACATCCTGATATTGTTGAGTCATTCATGCAACTCCATGCCCAGGCCCTCAAAAGGAAGCCTGACCTCTACCTGTCTGACCATCAAGATGTAAAGGCTCTATTCTACTGCGGGGTCCTGTCACTCAAGTTCCCGGAGACGCCTACAACGAAGTCAGCCTGTATGTTCTTTgcagTGTACACCTGGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846277 lncRNA upstream 33226 73809963 ~ 73811422 (+) True G745534
TU846254 lncRNA upstream 72796 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846242 lncRNA upstream 90783 73753604 ~ 73753865 (+) True G745501
TU846241 lncRNA upstream 91925 73752444 ~ 73752723 (+) True G745500
TU846240 lncRNA upstream 93186 73751152 ~ 73751462 (+) True G745499
TU846304 lncRNA downstream 10968 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA downstream 16836 73876298 ~ 73882450 (+) True G745557
TU846316 lncRNA downstream 32176 73891638 ~ 73892041 (+) True G745568
TU846344 lncRNA downstream 74033 73933495 ~ 73933754 (+) True G745594
TU846345 lncRNA downstream 75846 73935308 ~ 73935597 (+) True G745595
XM_021613696.2 mRNA upstream 7273 73834830 ~ 73837375 (+) False LOC110530534
XM_036986189.1 mRNA upstream 7273 73834892 ~ 73837375 (+) True LOC110530534
XM_036986184.1 mRNA upstream 50828 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613693.2 mRNA upstream 82916 73754013 ~ 73761732 (+) True LOC110530531
XM_021613694.2 mRNA upstream 107950 73734827 ~ 73736698 (+) True LOC110530532
XM_021613706.2 mRNA downstream 50316 73909778 ~ 73917998 (+) True LOC110530540
XM_021613709.2 mRNA downstream 64847 73924309 ~ 73931497 (+) False LOC110530541
XM_021613708.2 mRNA downstream 64859 73924321 ~ 73931497 (+) True LOC110530541
XM_021613713.2 mRNA downstream 80632 73940094 ~ 73951207 (+) False LOC110530543
XM_021613716.2 mRNA downstream 81506 73940968 ~ 73950958 (+) False LOC110530543
TU846223 other upstream 123998 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 249410 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 594152 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 976266 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 979945 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1093223 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1155182 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1163702 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1172468 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1468310 75327772 ~ 75328195 (+) True G746936

Expression Profile