RNA id: XM_021613706.2


Basic Information

Item Value
RNA id XM_021613706.2
length 3342
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110530540
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73909778 ~ 73917998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTGCTACCTCTGCGCGATGAAGTTTGGAGCGGCGCCGACCGGCCATACTGACAGACGTGGCTGGAAATTACTATATTTTTTTTGCAGAACATTTTCTGTGAGTAAATGTATTGAACCAATTACGAGGTTGGCGCAAATGATTTTCTCCGAAGTTGGACTAATGGACAATCCTGCTACTGGCTGTCTAATCTGAAATCGACCACATATGTTCCTAAAACGACTCGCCATTATGATCCTTTCACTCTGGTGCAAGTAAAAGTTGTATTTCTCACGCATCGCAAGACAGGGAAAGATACCTCACAACAAGACGGTTTGCAATATAAACGTTTGGAACGGGATGTTTTATCCCTCTGAAGTCTTATTCTACATGGATCAAGCACCTCCAGCTCTCCCTCCCAGGTCAGCCAAACCTATTACCTCCTTCATGAACGACAACTGCCTAAGGGAAGCCCCAGTATATCCCCTGCAGGATGCCGAGTGGTACTGGGGAGACATTTCCAGGGAGGAAGTCAACGAGAAGCTCCGCGACACACCTGATGGTTCCTTCCTGGTTCGTGACGCTTCCACTAAGATACAAGGAGACTTCACGCTAACGCTGAGAAAAGACGGGCACAGCAAGCTGATTAAGATCTACCACCGTGAGGGGAAGTATGGCTTTTCAGAGCCCCTGACCTTCTGCTCTGTAGTGGAGCTCATCTGGCACTACCAGCACCATCCTCTGGTGGAATACAACGCTGTACTGGACGTCATGCTCACACACCCTGTTTCCCGCTTCCAACAGGATGAGCAGGTGAAAGTGGACAGTGTTGATGTTGCCGGGAGGAAGCTACAGGAGTACCACAGTCAGTACCAGGAGAAGAGTCAACAGTTTGACTGTCTGTACGAGGCCTACACTAAAACCTCACAGGAGATCCAGATGAAGAGAACTGCGATAGAGGCCTTTAACGAGACCATGCTGATCTTCGAGGAGCAGTGTCGCGAGCAGGAGCGTTATGGGGAGGAGTGTGAGAGGAGCATTCGATCTAAGGGAACAGAGAAGGACTTGGAGAGATTCCTGATGAACTATGAGAAGCTAAAGTCTCGGCTGGGGGAGATCTATGACAGTAAGGTCCATCTGGAACAGGACCTGAGGACCCAGGTCCAggactacagagagacagacaggaggatcAACAGCCTCAGGCCTGACCTCATAGAGCTACGCAACATCAGAGACGAGTACCTCAATTGGCTGAATCACGAAGGTGTGCAACAGAAACGCATTAACGATTGGCTGGGGTTCCAAGACAATAGCAGTGACAACACCTACGTGTTGaagggtgagagtgagagactggCGCACCATGACGAGGGGAGCTGGTTCGTGGGCGAGCTGAGCAGGACCCAGGCTGAGGAGATGCTGATGGACAAACCCACCGGAACCTTCCTGATTCGCGAGAGCAGCAAGCAGGGTTGCTACGCCTGTTCCGTAGTTGTTAATGTAGAAGTGAAGCATTGCATGATTTATAGCACGCCACGTGGCTATGGCTTTGCTGAGCCCTACGACCTCCACTGCTCTCTGAAGGAGCTCGTTCTGCACTATCGCCTCAACTCCCTGGCACAGCACAACCAGGCCCTGGACGTCCGGCTGGAGCACCCTGTCCACGTCACTCCTGTCTCGTCAGCCTTCCCACACACAGCCACAGAGGACTGCCTGCTACAACAGACGGAGGAACACCACCTTCTACAGACTCAAACTAAACTACCTGCTGGACTCCCTGCAGCCGCTCCGGAGATGTAGATTAGTCAGCTGTGGGACGTGTTTGCGTACTGTAGCTATCCTACGAGGACTACTTGAGGGTGGACTTGTTTGCGTACTGTAGCTATCCTACGAGGACTACTTGAGGGCGGACGTGTTTGTGTACTGTAGCAACTTGAGGGCGGACATGTTTGCGTACTGAAGCTATCCTACGAGGACAACTTGAGGGCGTTCTTTTCTCAAAGAAGAATGTGTGAAATTTGCACTAGGATGATTCCAACGGATTGGTGAATGTAATTTCACTTAATTGGAACTTTGACCGGAACTTGAATGTCAGCTAGGactttgttttttataagattcTGTTtgctatttgttttttttttgtacccATTTTTCACCTTTTTTTCATGGGATTTGATTTGTTTTAGTGGGCCTGGTCATCCGGGAGATGACTGACTACATATACTATGTCACAATATGTTGGTATTTGTCAGGTGCTGTTTTTTTATTTGGACTTCTAGGGTCCCATTTTGACAACACAAGTACTGGTGCTAATGTAAAATGAGATTGTAATACACCCAATACCTTGGAATTTAGAATTTATTTCAAACATTTTAATTGTTGTGATGTCCATGCACGGAAGATCCTAAAAGTGGAATTAGAATATAATGGTACAGAAAAACGAGATGGCTGACTCAGTGGCATAGCTAGCTGTGGTACACATACCAAACATGTTCTGGGTATTTCAGTACATAGTCATGCAAATATAGGAACTGATGTGGCGCATCGTGTCAGTAgcgctgttttttttgttgtcaaaatATAACCCAGTTACCAGttgatatgtactgtatgtagcataAACAATTTTCTGGATATCCTTCGAATGACATTTTCCATATTGTATCCAATAACCAAAGCACTTGCTATTAGTGATAAAAGTATATATTCCGACCAGAATATTACATTTATGGTGATGGCGGAAAACACACCACACGTGCTTGATCAAAACATAAATTgaagtactgtatattatattctGTTATTCAAAGTATAAGCTTTTTGTATTTTTTGATATGATATATTTTCTGAAATATGCCACAGAAGATGAAAGCTTGAGGAAAGTGCAATCCAACAGTATTTGTAATTTTAGAAATTCATTATTATAATTATGGGGGGTCATCAGCTTTTGCCACAGAAATGCACTAACTTTTAATTGGTGGTGTTATTCATCTGATGACGTGACCTTTTAAGAACATTGTGTGAACTGCCAGAGATGCGGAAGTGTACATTCTGTCTCTATTACTTGAACTGTGGCATTGAGCGGTTAATAAGAGCGATTAATATTTCCTCAAGACATGTAGGCCTACATAGCTTAAGGAAAATAATACATTTTGTTCTTGGCACATATGTCAAGTTTGAGGACAAAAGACACTCTGTATTGAGATACTGTAAAACGTTTGTGGTTGGTTGGATGGAGGGTGTCTTTCTTAAAAACTAGACAGGAGCATTGAGGAAACTCCTGGGACGACTTTAAGCAATGTGAGATTCTTAATTTTTCTTGCTGAAGACAATAAACTGATGAGGGTTTTGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846316 lncRNA upstream 17737 73891638 ~ 73892041 (+) True G745568
TU846304 lncRNA upstream 27328 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA upstream 27328 73876298 ~ 73882450 (+) True G745557
TU846277 lncRNA upstream 98356 73809963 ~ 73811422 (+) True G745534
TU846254 lncRNA upstream 137926 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846344 lncRNA downstream 15497 73933495 ~ 73933754 (+) True G745594
TU846345 lncRNA downstream 17310 73935308 ~ 73935597 (+) True G745595
TU846339 lncRNA downstream 18511 73936509 ~ 73936859 (+) True G745589
TU846340 lncRNA downstream 18950 73936948 ~ 73937684 (+) True G745590
TU846335 lncRNA downstream 20342 73938340 ~ 73939164 (+) True G745585
XM_021613698.2 mRNA upstream 47572 73844649 ~ 73862206 (+) False LOC110530535
XM_036986190.1 mRNA upstream 47572 73844649 ~ 73862206 (+) True LOC110530535
XR_002474546.2 mRNA upstream 48522 73844648 ~ 73861256 (+) False LOC110530535
XR_005052950.1 mRNA upstream 48609 73844648 ~ 73861169 (+) False LOC110530535
XM_036986191.1 mRNA upstream 49507 73844648 ~ 73860271 (+) False LOC110530535
XM_021613709.2 mRNA downstream 6311 73924309 ~ 73931497 (+) False LOC110530541
XM_021613708.2 mRNA downstream 6323 73924321 ~ 73931497 (+) True LOC110530541
XM_021613713.2 mRNA downstream 22096 73940094 ~ 73951207 (+) False LOC110530543
XM_021613716.2 mRNA downstream 22970 73940968 ~ 73950958 (+) False LOC110530543
XM_021613712.2 mRNA downstream 22971 73940969 ~ 73951207 (+) False LOC110530543
TU846223 other upstream 189128 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 314540 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 659282 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1041396 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1045075 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1034687 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1096646 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1105166 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1113932 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1409774 75327772 ~ 75328195 (+) True G746936

Expression Profile