RNA id: XM_021613716.2


Basic Information

Item Value
RNA id XM_021613716.2
length 3044
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110530543
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73940094 ~ 73951207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGAACTTGAACGTACCCCAGATAAGTAAACTCCGCGAGCGCACCAAAAATCCAAACAAACACCCAATCGACACTTTAATCTGGAGGCACATAGCAGGACGAAAGTATTGCAGTGCTAATGGAATATTAATAGTcaagatatattttttaaatcatatttCTTGAAGATATTGCTTGATATAAGTAGGTTTTGGCATCATCCTATAAAatctagcaagctaacgttattagctagctagcgccCGAATCCCCCGACCCGGTGTGGGCTAACGCGGTAGCCATTTTGAAGCCGTGTTGTGCCAACGAAGCGAAGgTCCGGTCTGCATAAGTGCAGATACTACTACATGTGAAAGCAACGCTACAAGAGGACTGAAAATACTAGGAGTAACTGCACAGCACCTGCCTGTCCTTCTGACACATGCTCCATATGTTCCTACACTTTCTTTGCTTTGAAGAAAGGAAGATATTTGCCTTTCAGAGGTTCCCTCTTTTATGGACAAGTTTATTTTTTGTCTTTCAACAAAGTGTCCCAGGTGTGTTGTGACACACAGAACACTGATTGTAAGCAATTGCTGTTATACTGTTTAAAAACCTTTGCACTCTCATCCTTCAACCACACAACTACAGCTAATTATACCAGCAAATATAATAGAACAGATGAAGAAAGCAACCAATCTAATCAGCCGTTGAAACACCATTGTCCTTAGCATGCATTGAAAAGCTGCATTATAATGCGTTGTTCTGCAGTATCAACATTTCACTGACCGGAATTGAAGATGTCAGAAATGTAACAGTGGATTCTACTGCCTTTACTGTCATGTGACTGTAATACTAGACACCCTTTTTTCCCTTCAACCCCAGACAGCCTTTTCACCAGTTTAATGAGGTGAGCTGTGGTTTTCAGTGACCTCCATTGGCATAAAAAGAGGTCtctgaatttatttattttctgcaTGTGTTTGGGTAGAGCCTAAAATGACTAAGAGCTGGCACTCATAGTGGCAGGAGAAGAGCCAGAACCTCCTTCCAGCACACTTCTGATGTCATAGTGAAACTGTCCCGTTCACACTGACAGGGCTCGATGCCCCAGAGCTTCCAATCTCAGCAGACAACCTGCACCTGCCTCTCCCATTGGGCAATTCACTTGCCTGTCTACTGAGCCCACCAATCAGAACCTTCTGTTTCACAAAACGGATCAAGCAGGTTCCATGTGTCTCTTCCCCTGACAAAGAATCCTACCTGCTTCGGTAGAGTGATCAGGACGAATTTGGGGGTAACAACGCGCCTCTGGATCACCATTCCAGATAATCCCAGAATCCTGTGACCCGACTCCCAACTTTTCACCCTGGACGACGGGGTCTGCCTCTGGGGAAAGGGGCTGTTCTgtcctggaggaggaggagggctcgGCAGTGAGGTGCTGCTCTCCATCACACACTCTGAGTCAATCCCACAGAGGAGGCAGAGaccgagaggaagaggagaggacttcAGAGCCAAAGACTCTGGGATCCTTGCCATGAGGTTTGATGCCTCGATCAACTGACAGGAGACACTGGACCTAAATGGCGCAGCATGACTTTGTTCCTGCCTGGCTTAACTTCTCCACGCCCCAGCCTGCCAAGTCCCCTGCAGCCAGCCTAGAGAAGCATGGCGACCCCCATCACCACCGGAACAGCCGTGCTGCCGTGAGCCGTCGCCGACACAACTCCTCCGATGGCTTCTTTAACAACGGGCCCCTGCATGCCCCCGCAGgtgaTGGGTGGCAgcagccctctctcctcctgagACATGACTCTGTGGACTCTGGGGTGGCGAAGGGGGGGCACGGTGGTCTAGCGGGGGGGTCCTGCTGGAAGGAGGCTCATCCCACCTGGCACGGGGCAGCACAGGACAGGCACCACCACCCGGGGCGCCAACCCAAACGCCATGGGACGGGAGGAGGGGACAGGCAGGGGGGACACCGGCAGCGCAACGGCAACTTCCATCCCCGCAAGAGCGCCCCTGGGACCCTCTACCAGGACAAATTCCCCAATGATGAACACAGCAGGGAGGACAATCTGAAGTTTGTGGAAGAGGACTTTCCCTCCCTTAACCCTGAAACAACTGGAAAGCCTGGGAACCAGATGAGGCCAGTGGCTCCTCACGCTGGAGTATGGGAGAACCCGCCTAGTGGCAAGCAGATGGTGTCTAAGATGCTGGTGATCAAGAAGGTTTCCAAGGAGGACCCAGGATGCACTGCGTTCTCTACTGGCTTCGCCAGCTCCGGAGCCCCGCCCATCAATGGCAGCAAAGCCCTGCCCACCATCACTAGCTCTACCCACTCAGTCTATAAGAACCTGGTGCCTAAGTCTGCCATGGTGCCCACCAAGCCCCCTCAGTGGAAGCCGAGTGGGAGAGACTCCACCAAGCCTGGCCTCCACCTGTCAGGACGAGACTCTGTCTTCACCAGCCCTGTGTCTGCAGCCAAACCCACCACCCAGCTACATAGCCACAACACCCCCAAAGAGCGTCCTTTCAGTACGACTCCTCCCATAGACATCGCCTCGTCGTCACGGCTGAAGCTGATGCGGCGCGGACCAGACCGGAAGAGTGACTTCCTGCGGACGCTGAAGGACGAGGTCACCGGTGACCTGACCTCCAGCAGCAGCCCTGGGACACCTGGAGAGACTCCTCAGGGCGAGAGCAGCACCCCAGAGCCCAAAGCCTACAGCCAGGGAGTCTGCAATGAGAACGGCCTGTCTCACTCCCTCAGCGACTCAGACACTGATCACTTGTCTAGCTCACTGGAGGCAGAACATCGGTTACTGAAGGCCATGGGCTGGCAGGAATACCCAGAAAACGATGACAGCTTCCTGCCCCTGACTCAGGAAGAGCTCAGAGAGTTCCAGACTAAAACTGAACATGTTATTGTTCTTCCTAGCTGAAGAGGAATGGGATCATCCCCCTCCACTTCACCCACTGGAGGTGTGTTGCCGAGGCCCACTTAGAAAAGGACGAGGGCTCAGAGTCTGAAACCAGCAGCCAGAcctcagatgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846335 lncRNA upstream 1804 73938340 ~ 73939164 (+) True G745585
TU846340 lncRNA upstream 3284 73936948 ~ 73937684 (+) True G745590
TU846339 lncRNA upstream 4109 73936509 ~ 73936859 (+) True G745589
TU846345 lncRNA upstream 5371 73935308 ~ 73935597 (+) True G745595
TU846344 lncRNA upstream 7214 73933495 ~ 73933754 (+) True G745594
TU846350 lncRNA downstream 13052 73964010 ~ 73964227 (+) True G745600
TU846351 lncRNA downstream 13447 73964405 ~ 73964631 (+) True G745601
TU846352 lncRNA downstream 13705 73964663 ~ 73964945 (+) True G745602
TU846354 lncRNA downstream 15245 73966203 ~ 73966429 (+) True G745604
TU846359 lncRNA downstream 30847 73981805 ~ 73982592 (+) True G745609
XM_021613709.2 mRNA upstream 9471 73924309 ~ 73931497 (+) False LOC110530541
XM_021613708.2 mRNA upstream 9471 73924321 ~ 73931497 (+) True LOC110530541
XM_021613706.2 mRNA upstream 22970 73909778 ~ 73917998 (+) True LOC110530540
XM_021613698.2 mRNA upstream 78762 73844649 ~ 73862206 (+) False LOC110530535
NM_001124277.1 mRNA downstream 23698 73974656 ~ 73981179 (+) True prdx1
XM_021613729.2 mRNA downstream 31750 73982708 ~ 73989915 (+) False zte38
XM_036986193.1 mRNA downstream 31751 73982709 ~ 73989915 (+) False zte38
XM_021613752.2 mRNA downstream 277153 74228111 ~ 74230113 (+) True LOC110530564
XM_021613751.2 mRNA downstream 293443 74244401 ~ 74247287 (+) True LOC110530563
TU846223 other upstream 220318 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 345730 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 690472 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1072586 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1076265 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1001727 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1063686 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1072206 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1080972 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1376814 75327772 ~ 75328195 (+) True G746936

Expression Profile