RNA id: XM_021613729.2



Basic Information


Item Value
RNA id XM_021613729.2
length 1194
RNA type mRNA
GC content 0.47
exon number 12
gene id zte38
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73982708 ~ 73991211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACTCGGTCTCGCGGTACTTTTTACCTCAGGTTGAACAAGGGGGTAGGTACGCTAGCTACCTAGTGGTTTTGTCTATGACAAAAGTATATCAGATGAACGTTAGCTACCtataaacacttattttaacaaTATATAAATACTTTTAAAATAATTGACAGTACTGTAAAGTTAGGCCGCTAGCTACTGGAAATTAGCTAACGACAAACCAACAACGTTCACGATGGCAGCTGGAAAGATGTGTAGTAGGCCAAAAaaacaggagacagcagagTGGACCAGCTTATTTCAAAACGAACTGAAAACTGAAGAAAagtccctggtctttgtgaagCGAATGATGGCCCTCGCCGTTTCTTCCATCACATATCTCAGAGGAATATTCCCTGAGGACGCCTACAGATCTCGATATCTAGAAGATTTATGCATCAAAGTTTTACGAGAAGACTGCACAACACCTGGTGTCTGCAAAATTGTAAAGTGGCTGATGGGGTGCTTCGACGCATTAGAGAGAGGATATCTTCAGGTTGTGTTTATTGGGGTCTGCACCAATCCAGATAATCCCAACTGCATCATCGAGTCATACCAGTTCAAGTTCACATACACAGACAAAGGACCACAGATGGACATTCTGAGAAACCAGAATGTGGAGATGCAGATCACGATGGAGGATACCAAGAAGGCCTCTGTCCTCTTGATCAGGAAGCTGTTTCTCCTCATGCAGAACTTGGACGTGCTCCCCAATGATGTCTGCCTCACCATGAAGCTCTACTACTTTGACGACAtCACCCCTGCTGACTATGAGCCTCCAGGTTTCAAGGAGGGGGTGAACGACAACCTGTGGTTCGAGGGCATGGCAGTGCACTTCAGAGTGGGTGAGGTGCACACCCCTTTCCACGCCCTGAAGGTGAGGGTGGCGGCGGAGCAGGGCCGTGTGGAGAAGCTGCAAGAGGGGAACTACCTGAAGGAGAGTCAGGTCTCCACGGCTACGCAGAGCACTCTGCCAGGGCTGGCGCCAACCGGTGCACAGGATCCTGACAATGAGAGATACAAAGAAGATGACTTTCCCTCTGAAGATGAGTCTGCACAGTTCAAGAAACCCAAGAAACCTGTGGCAAAGAGTAAAGGTGATGCCAATAAACTGGCAACGAAAAAAGGAAGAAAAGAGCAATAAAAATGTTTTGATGAAGACAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846359 lncRNA upstream 116 73981805 ~ 73982592 (+) True G745609
TU846354 lncRNA upstream 16279 73966203 ~ 73966429 (+) True G745604
TU846352 lncRNA upstream 17763 73964663 ~ 73964945 (+) True G745602
TU846351 lncRNA upstream 18077 73964405 ~ 73964631 (+) True G745601
TU846350 lncRNA upstream 18481 73964010 ~ 73964227 (+) True G745600
TU846362 lncRNA downstream 15715 74005630 ~ 74005982 (+) True G745612
TU846373 lncRNA downstream 25975 74015890 ~ 74016434 (+) True G745623
TU846383 lncRNA downstream 39968 74029883 ~ 74030254 (+) True G745633
TU846395 lncRNA downstream 61473 74051388 ~ 74052113 (+) True G745643
TU846397 lncRNA downstream 63184 74053099 ~ 74097615 (+) False G745645
NM_001124277.1 mRNA upstream 1529 73974656 ~ 73981179 (+) True prdx1
XM_021613713.2 mRNA upstream 31501 73940094 ~ 73951207 (+) False LOC110530543
XM_021613712.2 mRNA upstream 31501 73940969 ~ 73951207 (+) False LOC110530543
XM_021613715.2 mRNA upstream 31501 73940970 ~ 73951207 (+) True LOC110530543
XM_021613716.2 mRNA upstream 31750 73940968 ~ 73950958 (+) False LOC110530543
XM_021613752.2 mRNA downstream 238196 74228111 ~ 74230113 (+) True LOC110530564
XM_021613751.2 mRNA downstream 254486 74244401 ~ 74247287 (+) True LOC110530563
XR_005052952.1 mRNA downstream 285411 74275326 ~ 74279768 (+) True LOC118965552
XM_021613761.2 mRNA downstream 378222 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 383538 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
TU846223 other upstream 262058 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 387470 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 732212 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1114326 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1118005 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 962770 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1024729 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1033249 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1042015 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1337857 75327772 ~ 75328195 (+) True G746936

Expression Profile