RNA id: XM_021613752.2


Basic Information

Item Value
RNA id XM_021613752.2
length 1748
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110530564
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74228111 ~ 74230113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTAGGAAATCATATGATCAGGCGCTCCTCCCCTCCGTTTGTTTTCGCGGAAGTAAAAACTATCAAtgtggtagctagctaactaacatttgTCTTTCCGACTGAAAATTATCTTTAGAAACATAACACTAGTCAGATAAAATGTTGTTCCAGGAGAATATGACTAATTGTGTTACTTTTCAAACCAAATTAAGCTCAGTTATGGATGTGTTGGCCAAAACTGCGGTGGCAGAAATAAGTAAAATGTTCGATGATGGGTTTGCTGTTTTACGCTTGGAAATGTGCAGAAGAGAAAATGAAATTGAAACCTTGAAAAGACAATTATTGTTTATGGAGAACGAACGGCAAACGACGAGGTCCAAAACGCAAGAAGCAGGCTGTTCTTCTACATGCTCGTCCTCTTCCAGCCGAACGGAGGAGGGACAGGGGTCCAAGGGGTCTGATGAGGATGCTAGTGAAAGGACTTCTTTTGAGCAGAACGCCAGAGAGAAAAATGACCAACTGGATCGAAATAGACCACAGCCACATGCAGAAGAAGTAGAGGGGCTTGATGAACAGTACAGGTCTGGCCACAGAGAGAAGGGTAGTGGACTAGAGTTAGTGAAGAGAGAGCAAGTGGAGGAGTATGATGTTATTTCACTACATTCATCAGGAAGTGAACATGGCACAGAGAGTTCAGATCATGAGGAAACTGAGTTTGctgtggatgagagagagagtcagctctgGGCGTCTTTAACAGAGCGCAACTGTGACTCGGAGGGTCCAGATTACCATAAGTGCACAGAACAATATCCACTGGATCAAGATACAGACATACAGCTCATTCAAAGTGCAGTGGAGGGTCTCGATAGCATTCAATCGTCCGAGATGGATGACATTAACAGAGTTATGAAAGAAGAGATGCGAGCACAGTCTGTTTGGAATGACAGAAGGACCCCTACAGATTTGGTTCAGGCACAGCCAGGACAGCACAGAGAAACCATGCACCCAGAGAGAAACCAGGATGGGACAACTACCAGAGTGCCATCAGACAAACAAACACTAGCCAATGAGGGTGCAGGATATTCCAATGTTTGGCTAAACAGTGTATTTTCGCTTGCCCCAAATAGTTTTCACTCAGCAAAGGTATCCCCAATGAGAACCCCAGCAAGAGAGAAGTGGTTTGTTTGCTCCTTCTGTGGAAAGAGCTTTGACCGGTTTGGTCACCTGGAGATGCATCAGCGGATTCATACGGGAGAGAAACCGTACAGCTGTGTCACGTGCGGGAGGTGTTTCGCTCAGCAGAGTAATCTCCGCACACACCAGCGAGTACACAGGGCCCTCAGAACAAACCAAACTGTCTACTGATCCATCACCATGACGAGACAATTTAGAGCATCCTGGAGAAACCAGAAGCCCATCCCACACGTTATGAAACACAACCTCATTGACAAACATTTTCTAATGAGAAGACCATCAAGACACTTGCAGAAAGCAGCAGTGTGTTACTTTTGTCTTCCCATTCTATAAAGTGAGAGCAGTGAGACCCTACCACAACTGTTGCACTAGTGGTGCTTATATACTGTAGTGAGGGATCAGAGTTGCAGGTTTACAGCTTCCTGCTTGTAACCTTTTAAGGACCGCTTAAGAGGAGGATCTCCATCATCTTTAGGTTTTTGTAGACCTATGCCAGACTAACACTACAATGGACATGCTTTTGTCAATGCATACATTTTTATGAATAAATGTGAATTCTCTCAAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846506 lncRNA upstream 8157 74218598 ~ 74219954 (+) True G745737
TU846454 lncRNA upstream 17061 74209489 ~ 74211050 (+) True G745689
TU846402 lncRNA upstream 27402 74074951 ~ 74200709 (+) False G745646
TU846405 lncRNA upstream 29846 74133747 ~ 74198265 (+) True G745646
TU846414 lncRNA upstream 113097 74105268 ~ 74115014 (+) True G745655
TU846517 lncRNA downstream 18240 74248353 ~ 74249745 (+) True G745746
TU846569 lncRNA downstream 72993 74303106 ~ 74308955 (+) False G745795
TU846570 lncRNA downstream 72993 74303106 ~ 74304882 (+) False G745795
TU846571 lncRNA downstream 76145 74306258 ~ 74308955 (+) True G745795
TU846573 lncRNA downstream 81871 74311984 ~ 74312241 (+) True G745796
XM_021613729.2 mRNA upstream 238196 73982708 ~ 73989915 (+) False zte38
XM_036986193.1 mRNA upstream 238196 73982709 ~ 73989915 (+) False zte38
NM_001124277.1 mRNA upstream 246932 73974656 ~ 73981179 (+) True prdx1
XM_021613713.2 mRNA upstream 276904 73940094 ~ 73951207 (+) False LOC110530543
XM_021613751.2 mRNA downstream 14288 74244401 ~ 74247287 (+) True LOC110530563
XR_005052952.1 mRNA downstream 45213 74275326 ~ 74279768 (+) True LOC118965552
XM_021613761.2 mRNA downstream 138024 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 143340 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 146734 74376847 ~ 74382998 (+) True ftr66
TU846223 other upstream 507461 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 632873 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 977615 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1359729 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1363408 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 722572 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 784531 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 793051 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 801817 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1097659 75327772 ~ 75328195 (+) True G746936

Expression Profile