RNA id: XM_021613751.2


Basic Information

Item Value
RNA id XM_021613751.2
length 1729
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110530563
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74244401 ~ 74247287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTAATGATCATATGACCACTCGTTCCTCCCCTCCGTTTGCTTTCGCGGAAGTAAAATCTGTCAATGAGGTAGCTAACAAAGCAGAGCATCTATTactatttcttgttttttttcagaTTTAAAATCTGTAGAAACATAACACTAGTCAGATAAAATGTTATTCCAGGAAAATATGACAAATTATGTTACTTTTCAGACCAAATTAACCTCCGTTATGGATGTGTTGTCCAAAACTGCGGTGGCAGAAATAAGTAAATTATTCGATGATGGGTTTGCTGTTTTACGCTTGGAAATGTGCAGAAGAGAAAATGAAATAGAAGCCTTAAAAATCAAATTATTGTTTATGGAGAACGAACGGCAAACGACAAGGTCCAAAGCGCGAGAAGCAGGATGTTCTTCCACATGCTCTTCGTCTTccagcagaacagagcaggGGTCCAAAGGCTGTGATGAGGATCCTGGTGAAAGGACTTCATTTGAGCAGAATGCCAGAGAGAAAGACGACCAACTGCATCAAAATAGACCACAGCCACCTGCAGAAGAAGTAGAGGGACTTGAACAGAACAGGTCAGGCCACAGAGAGAAGGATAGTGGACTAGAGTTCGTGAAGACTGAGCAGGAAGAGTATGATGTAATTTCACTACATACATCAGTAAGTGAACATGGCACAGAGAGATCAGATCATGAGGAAACTGAGTTTGctgtggatgagagagagagtcagctctgGGAGTCTTTAACAGAGCGCAACTGTGACTCAGAGGGTCCAGATTACCATAAGTGCACAGAACAATATCCACTGGATCAAGATACAGACATACAGCTCATTCAAAGTGCAGTGGAGGGTCTCAGTAGCGGTCCATCGTCCGAGATGGGTGACATTAACAGAGTTATGAAAGAAGAGATGCGAGCACAGTCTGTTTGGAATGACAGAAGGGCCCCTACAGATTTGGCTCAGGCACAGCCAGGACAGCACAGAGAAACCATGCACCCAGAGAGAACCCAGGATGGGACAACTACCAGAGTGCCATCAGACAAACAAACACTAGCCAATGAGGGTGCAGGATATTCCAATGTTTGGCTAAACAACGTATTCTCACTTGCCCCAAATAGTTCAAATGGTTTCAACTCAGCAAAGGTATCCCCAAGGAGAACCCCAGCAAGAGAGAAGTGGTTTGTTTGCTCCTTCTGTGGAAAGAGCTTTGACCGGTTTGGTCACCTGGAGATGCATCAGCGGATTCATACGGGAGAGAAACCGTACAGCTGTGTCACGTGCGGGAGGTGTTTCGCTCAGCAGAGTAATCTCCGCAGACACCAGCGAGTACACAGGGCCTCACAACAAACCAAACTGTCTACTGATCGTTATCACCATGACTAgacaactaagagcattgtagaACAATATTTTCTAATGACTGAGAACAGAGTTGATAAGACCATCAAGACACTTGCAGAAATCAGCAGTGTGTTACTTTTGTCTTCCCATTCTATAAAGTGAGAGCAGTGAGACCCTACCACAACTGTTGCACTAGTGGTGCTTATATACTGTAGTGAGGGATCAGAGTTGCAGGTTTACAGCTTCCTGCTTGTAACCTTTTAAGGAACGCTTAAGAGGAGGATCTCCATCATCTTTAGGTTTTTGTAGACCTATGCCAGACTAACACTACAATGGACATGCTTTTGTCAATGCATACATTTGTATGAATAAAAATCTGAATTATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846506 lncRNA upstream 24447 74218598 ~ 74219954 (+) True G745737
TU846454 lncRNA upstream 33351 74209489 ~ 74211050 (+) True G745689
TU846405 lncRNA upstream 46136 74133747 ~ 74198265 (+) True G745646
TU846414 lncRNA upstream 129387 74105268 ~ 74115014 (+) True G745655
TU846398 lncRNA upstream 142523 74096562 ~ 74101878 (+) True G745645
TU846517 lncRNA downstream 1066 74248353 ~ 74249745 (+) True G745746
TU846569 lncRNA downstream 55819 74303106 ~ 74308955 (+) False G745795
TU846570 lncRNA downstream 55819 74303106 ~ 74304882 (+) False G745795
TU846571 lncRNA downstream 58971 74306258 ~ 74308955 (+) True G745795
TU846573 lncRNA downstream 64697 74311984 ~ 74312241 (+) True G745796
XM_021613752.2 mRNA upstream 14288 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 254486 73982708 ~ 73989915 (+) False zte38
XM_036986193.1 mRNA upstream 254486 73982709 ~ 73989915 (+) False zte38
NM_001124277.1 mRNA upstream 263222 73974656 ~ 73981179 (+) True prdx1
XM_021613712.2 mRNA upstream 293194 73940969 ~ 73951207 (+) False LOC110530543
XR_005052952.1 mRNA downstream 28039 74275326 ~ 74279768 (+) True LOC118965552
XM_021613761.2 mRNA downstream 120850 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 126166 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 129560 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 161098 74408385 ~ 74413205 (+) False ltb4r2b
TU846223 other upstream 523751 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 649163 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 993905 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1376019 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1379698 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 705398 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 767357 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 775877 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 784643 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1080485 75327772 ~ 75328195 (+) True G746936

Expression Profile