RNA id: XM_036986227.1


Basic Information

Item Value
RNA id XM_036986227.1
length 2501
RNA type mRNA
GC content 0.44
exon number 2
gene id si:dkeyp-66d1.7
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74368137 ~ 74376776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggggcagagagggagagagATCCTTCTGCCACAGATGCACCAAGAACTGTAGGCCTAGGGTATTTCACAAACACCTACATCTCTGACCAATTCAGCCCTTCAGTCTAACCCATCCTAGTTGTCAAGCATCTTCCATATCTCATCATGCCGATAGTGGTGGTGCACTCCAACCCCCTGTTCTGGGTGCGTTTGTGTGCTCTGGTCTTCTCCTGTGTGGCTTTTGCTGTGACCATCCATGGGGCTGAGCTCAAGCACGGTACAGgggactggtgtgtgttctgctggGCCTTCAGCTTCGCTGGGACTCTGCTGGTGTTGCTGGTAGAGCTGTTTGGCCTGCAGACCCGTGCCCCCGTCTCCTGGAAAAACTTCCCCATCACCTTCGCCTGCTATGCCTCcctgctctgcctctctgcctccatcatcttccccctctatttcctcaaGGGCCAGACCTCCCGCAACGAGACTCATAACTACCGCATCGTGGCCACCGTCTTCTCCTGCCTGGCCACCATCGCTTACATGAGTGAGGTGAGCATCAGCAAAGCCCGGCCAGGTGAGGTAGCAGGTTACATGGCCACCGCCCCGGGTCTGCTGAAAGTGTGTGAAACCTTCGTGGCCTGCGTCATCTTTGTCTTCATCAGCGACCCGGTGTCCTACAACTCTCATGCTGCACTGAGGTGGTGCCTGGCCGTCTACTGCATCTGTTTCATCCTGTCGGCGGCCATCATTGTGCTGTGTATCTGCGAGTGCACTGGCTGCCTGCCTTTCCCCTTCGCCCGCTTCCTGTCTGCCTACGCCCTACTGGCTGTCATCATGTACCTCTCCGCTACCATCGTCTGGCCCATTTTTACATTTGACAAGGAGCACGGGGGCACTTCCTCCAGGCCCGCTTTCTGTGGTAACAGTCAAGGGCTGTGTTCATGGGACAAGAAGATGGCTGTGGCTGTGCTCACTGCAGTCAACTTTGTGCTCTACCTGGCAGACCTGATCTACTCTGCCCGACTGGTGTTTATTACTGTGTGAGCAAAAGGCATAGAGGGGAAGAACGAGAAGAGGTAGTTGATTTTTAAGTAGGATGGAAAGAGAGGTTGAGGAGTAGAAATGAAGAggtgaagaaagagggagaaacaaAGAAACTGCTTACTGTATTTTGTGTCATTTATATATCAATGTTAAGCCATTAGTCACCTCCACACATAGAGAAAGACTCAATTATTTCTTATTTCATGCATAAGGAAAAGTCCTTACACAACGATTTTATGGACCCAAGAACTATGATCAGATGGAACAGATGTTTTCTAAGTTTGAGCTCTGATTATCTGACACATAAATGTAGTATTCCAAAGACAGGATGGATCTGCTGAGTATGTTGACATTACTATAGATCATGTAAAGTCTTACAACTTTCAATGGTCTTTTAATAAGCATGACTTTTTACATGATGGAAAACTGTAGGTAGATTTTACAGAACAACTCACACCTTCCTAGTTTGTTTAAGATGAGTTACGAAGGGATAGAAGTAATTCAATCAAACCCCGAAGTAATTCCTAGAAGATTGGTACACTGCTCCAAATGCTTTCAAGACATGAAGTAGAACAAATTGTTTgaattaatgtaaagatatactCTGTTAGTGTAGGTTTTTTGCTAATTTTACATTCCTGTTTTTACCCTTTTTTTTATTTGTCTATTTTCATATTCTGCCAAGCTACATGTCAGGAGTATATTGTATGTTGAAATAATATATGCAGACGGTAACTGAATTAAAACTCACTGTGTAATGAACAATTACTGTTTGACACTTATGTGTTTGTTATAACCTGTTCTCTGTAGGCTATGACGTCTCCAAAAAACAACATCTCAGAATAAAAACAAAACGTTGTTAGGAAAATGTATTATTCTTAATCTGGCCCATTGCTTTGCACTTCTGTAACAGTCTGCTCTTGTGGATGAGAATGTCCACTTTGTCAGAGAGGGAGACATCCATTTGCTGCATCGTCCTCACTACTTCCTGCTGTTACTAAACATGACGTTTTTTCCCCCGCTGTGCTTGTTGAGACTGTGCGTACCACATCAGTGTTATGGGAACATACAATCTGGTGTTCAGTAAAAGCAATGTGATACATTTATATTAGGGTTTGTCAACTGGGGGCCCACGGGTCATTTTATTTAGCCCCCAAGTTGTTTTATTTAAATGATTTGACATAAAGgactaaaaacaccagcaaatcaacttcaactgttttttttaattttgggAATCTGTTTCAAAATTATTTCCACACACAACAGAGCGAGTAATGTGATTGTATACACAGCTAAGTTTCAAATTATTATGTTtgagtcaaatgttttctgtttgggcttcttgcagtcaatttgcagtctacagtCTGGCTGAATGTAGTTGATAGTCCCTGAATTATAGCCAATGTATATCTGTCTTTGTCCTTGTTAATTGAACAAAATAAACTAATACTTTGGtgttctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846599 lncRNA upstream 10772 74362439 ~ 74362681 (+) True G745821
TU846587 lncRNA upstream 25713 74344903 ~ 74347740 (+) True G745810
TU846536 lncRNA upstream 47552 74322703 ~ 74325901 (+) True G745764
TU846581 lncRNA upstream 53765 74319445 ~ 74319688 (+) True G745804
TU846580 lncRNA upstream 55238 74318004 ~ 74318215 (+) True G745803
TU846604 lncRNA downstream 2230 74379006 ~ 74379661 (+) True G745826
TU846625 lncRNA downstream 31633 74408409 ~ 74411331 (+) True ltb4r2b
TU846654 lncRNA downstream 102624 74479400 ~ 74480069 (+) True G745873
TU846535 lncRNA downstream 124695 74501471 ~ 74502888 (+) True G745763
TU846540 lncRNA downstream 126210 74502986 ~ 74503510 (+) True G745766
XR_005052952.1 mRNA upstream 93685 74275326 ~ 74279768 (+) True LOC118965552
XM_021613751.2 mRNA upstream 126166 74244401 ~ 74247287 (+) True LOC110530563
XM_021613752.2 mRNA upstream 143340 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 383538 73982708 ~ 73989915 (+) False zte38
XM_036986222.1 mRNA downstream 71 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 31609 74408385 ~ 74413205 (+) False ltb4r2b
XM_021613770.2 mRNA downstream 47671 74424447 ~ 74428142 (+) True sdr39u1
XM_021613765.2 mRNA downstream 54968 74431744 ~ 74438581 (+) True parp2
XM_036986217.1 mRNA downstream 103731 74480507 ~ 74501122 (+) False LOC110530582
TU846223 other upstream 652803 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 778215 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1122957 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1505071 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1508750 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 575909 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 637868 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 646388 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 655154 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 950996 75327772 ~ 75328195 (+) True G746936

Expression Profile