RNA id: XM_021613770.2


Basic Information

Item Value
RNA id XM_021613770.2
length 1382
RNA type mRNA
GC content 0.49
exon number 6
gene id sdr39u1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74424447 ~ 74428142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGGCTCTGTTCAGTATGGCATGTGACATATCTACTGGACACCGTTGGACAAATTCTTCTGCgtacactttaaaaaaaataatatttaactaggcaagtcagttaaagaacaaatcttattttcaatggcggtgTAGGAACAGGGGTTAACTcaggggttaactgccttgttcaggggcagaaaaacagattttaaccttgtcagctcgggaattcgatCTTCCGGTTACTAgatcaacgctctaaccactaggctacctgcagcgcCGTGCCAATTTGACTTAGTGTACTGTGAACAATCAACACAGGAAAGCAGAATTCCAACCCTGGAACTGGAAATTGTGTGATATGAGAGTGTTAATAGGAGGAGGATCTGGGTTTGTGGGAAGAGAGCTGACTCGTTTACTCAAGAACAAAGGTCATGAAGTCACAATAATATCCCGACAGCCAGGTCTGGGAAAGATCACATGGGGTGAATTGGAGTCTGGTGGCCTCCCACCATGTGAGGCTGCTGTCAATCTGTCTGGGGAGAATCTTATGAACCCACTGCGATGGTGGAATGAGGGTTATAGGAAGGATCTGTTCTCCAGTCGGGTTGACACAACCACAATTCTGTCTCAAGCCATTGCTGGGTCCCCCAATCCCCCTCATGCTTGGGTCCTTGTCACAGGTGTAGCATGTTATAAACCCAGTCTAACAGCTCAGTACACAGAAGACAGTGAGTGGACGCCATTTGACCTCCTGTCGAGACTGGTGAAGGAATGGGAGTCGGCGGGGCGTCTTCCTGAAAACATTGCACAGAATACCAGACAAGTAGTAATCAGACCAGGGGTAGTACTGGGCCGTGATGGTGGGGCCATGAAGCAGATGATGACTCCTTTCTGGCTAGGCCTTGGAGGCACGTTGGGGTCTGGCAGACAACCATTCCCCTGGATCCATGTCTCTGACCTGGCTGGAATCATCGCTCATGCCCTGGTGCCCTCTCCCGACACCCCCTCCTCTGCTGTCCCTCAAGTGTTTAACGGTGTCGCCCCAGCACTGAACACCAATTACGAGTTCACCAAAGAGCTGGGCCGGGTTCTGAGGAGACCCACTGTCTTCCCTGTGCCTGGATTTGTCATTGATGCCCTAATGGGTTCAGAGAGAGCCATAGTGCTAACCCAGGGTCAGAAAGTAGAACCCAAGAGGACTCTGGAGTCAGGCTTTCAGTACCAGTACCCAGACCTGAGCTCTGCCCTGAAGGAGATTGTTGGGAGCTAGATGTGAAACAGGAGATGTCAAGAGACTGAATGAGATTAGATTTTGTAACGTGAGAGAACTTCACTGATGTGAGCTTTTTTCCTGAATAAATATGAgatggaccctgtctttcaaaaaaaG

Function

GO: NA

KEGG:

id description
K07071 K07071; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846625 lncRNA upstream 13116 74408409 ~ 74411331 (+) True ltb4r2b
TU846604 lncRNA upstream 44786 74379006 ~ 74379661 (+) True G745826
TU846599 lncRNA upstream 61766 74362439 ~ 74362681 (+) True G745821
TU846587 lncRNA upstream 76707 74344903 ~ 74347740 (+) True G745810
TU846536 lncRNA upstream 98546 74322703 ~ 74325901 (+) True G745764
TU846654 lncRNA downstream 51258 74479400 ~ 74480069 (+) True G745873
TU846535 lncRNA downstream 73329 74501471 ~ 74502888 (+) True G745763
TU846540 lncRNA downstream 74844 74502986 ~ 74503510 (+) True G745766
TU846661 lncRNA downstream 76613 74504755 ~ 74505021 (+) True G745880
TU846665 lncRNA downstream 81274 74509416 ~ 74509726 (+) True G745884
XM_021613764.2 mRNA upstream 11242 74408385 ~ 74413205 (+) False ltb4r2b
XM_036986222.1 mRNA upstream 41449 74376847 ~ 74382998 (+) True ftr66
XM_036986227.1 mRNA upstream 47671 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_021613761.2 mRNA upstream 47674 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XR_005052952.1 mRNA upstream 144679 74275326 ~ 74279768 (+) True LOC118965552
XM_021613765.2 mRNA downstream 3602 74431744 ~ 74438581 (+) True parp2
XM_036986217.1 mRNA downstream 52365 74480507 ~ 74501122 (+) False LOC110530582
XM_036986219.1 mRNA downstream 52365 74480507 ~ 74501122 (+) False LOC110530582
XM_036986220.1 mRNA downstream 52366 74480508 ~ 74501122 (+) False LOC110530582
XM_021613773.2 mRNA downstream 52368 74480510 ~ 74501122 (+) False LOC110530582
TU846223 other upstream 703797 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 829209 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1173951 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1556065 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1559744 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 524543 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 586502 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 595022 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 603788 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 899630 75327772 ~ 75328195 (+) True G746936

Expression Profile