RNA id: XM_036986228.1


Basic Information

Item Value
RNA id XM_036986228.1
length 2144
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC110530591
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74697349 ~ 74712803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCCAGCTCCACGTGTGAGGAGTTGGTCTTGCTCTGCTCTGGGTGGTGGGGATCGGAAGTCCTTCCTCATTTTTAAgaaattatttacatttttactcACTGAAACTACAATTAATTtccaaataagcaaagaaacaTGAATTGGAGCTGGGTGCTTATGGCAGTCCTTCTGTCTTGTGGGGGACTGTCATGGGGTGAGCAGGGTTTGGACTTCCCTGAGTATGATGGGATGGACCGGGTCATCGAGCTGACTAACAAGAACTACAAGTCTGTGATGAAGACGCATGATGTGATGGTTCTGTACTACCATGAGCATCCCGGATCCGATGCCGTTGCCCAGAAACAGTTTGAAATCGAGGAACTGGCCCTGGAGCTTGCAGCTCAGGTACTTGATGACCTTGACGATGAGGATATTGGATTTGGCCTTGTTGATGAGAAGAAGGGCAGTGTTGTTGCTAAGAAACTAGGACTTGAGGAGGCCGACAGCATCTACATTTTCACCGAGAACGAGATCATTGAGTACGATGGGGAGCTTGCTGCAGACACAATTGTGGAGTTCATCTATGATGTTCTTGAAGACCCAGTTGAGATCATTGAGAACGATTCGGAGGTTAAAGGTTTCCATAACATTGAGGAGGATATCAAACTGGTTGGCTACTTTAAGAGCGAAAAGTCTGAACATTATTTGGCCTATGTGGACGCGGCTGAGGAGTTCCATCCACACATCAAGTTCTTCGCTACATTCACTCCCAAGGTTGCCAAGGATCTGGGCCTGAAGGTGAATGAGGTGGACTTCTATGAACCCTTTATAGATGAACCCATAGTTATCCCCGGAAAGCCCTACACAGAGGAGGAGCTTGTCGAGTACATCGAGGATCACGACAGACCAACCCTGAGGAAGATGGAGCCTGATAACATGTATGAGATCTGGGAGGATGACATCGATGGTGAGCACATCATTGCATTCGCAGAAGAGGATGATCCAGATGGTTTTGAGTTCCTGGAAATCCTAAAGGAAGTAGCAGAGGAGCACAATGATAATCCCAACCTCAGCATTGTCTGGATTGATCCAGATGACTTCCCGCTGCTTGTCCCATACTGGGAGAAGACCTTTGGAATTGACCTGGGCTCTCCCCAGATTGGTGTTGTGGATGTTGAAGATGCTGACAGTGTATGGATGGAGATCGACAATGATGACGACCTACCAAGCGCAGATGAGCTTGAGGAATGGATTGAAGATGTTCTTTCAGATGAAATTGATCcagatgacgatgatgatgatgacgacgatgatgatgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgatgatgatgatgatgagtaaATTGTTGATCTCATCATTTCACTGGCCTATGTCTAAATCTGGCCAATATAATAGAATTGTCCAATCACATCATCCCCTTCCTCAACTTGTCCTTGTCCTCTGTTGTAACACTTCATTAAGTTAAATATGTCCGCTCATATGGACATCCTCATGTTTTCAACATCCTTGCTCAGAGCATCTTGTCAAAATATTGTTTCATTTTTTTCACTTTGCTTTGAATCCATAAAAGACAGTACTTTCTCAGAGCCCCATTTTTTTATTCACACCACACCTGTAACTTTGCCATCCATACAATATGAAAAGGATACAAAGAATAAATTGTGAAAATAATCCTTTCAAAATACAACTATTGGATATTCATTAGCACTAAATCTTAAAACACCTGATGCTTCTGATTTGTATATTTCAAACAAATAGAGGGGTTACTTTGTGGATGCATTTTAAGTCTGAGTCCATCTGTAAACTTGTCGTctgaatgtattttatttttgttttattttctctAGATTAAATGTTCACCCCTCTCCTAACCTTGTCAAATCCAAGGGTGCAAGCAGGCTTTTCCTACATACAGGTCATGGGTCATACCAACCTACTCTGTTGAATTATTGTAACTTTAGTTGGTAAGCTTTTTTTCTTCTTGTGCACTGAAATGTGCTGTAAATCACATGGATGTTTTCTACTGACAAAGAAATATAACAACagtattcattttttttaaacaagaaaaCTTAAACATACTGTAAAGGCTTAAAATAAATGACAGCTTGGAAAAAGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23468 CASQ1; calsequestrin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846701 lncRNA upstream 2437 74694712 ~ 74694912 (+) True G745920
TU846691 lncRNA upstream 15159 74681895 ~ 74682190 (+) True G745910
TU846689 lncRNA upstream 16795 74680337 ~ 74680554 (+) True G745908
TU846688 lncRNA upstream 17806 74679330 ~ 74679543 (+) True G745907
TU846544 lncRNA upstream 54028 74628791 ~ 74643321 (+) True G745770
TU846716 lncRNA downstream 14966 74727769 ~ 74728646 (+) True G745932
TU846742 lncRNA downstream 40485 74753288 ~ 74753974 (+) True G745950
TU846770 lncRNA downstream 67974 74780777 ~ 74782673 (+) True G745967
TU846786 lncRNA downstream 79312 74792115 ~ 74792467 (+) True G745976
TU846787 lncRNA downstream 79755 74792558 ~ 74792816 (+) True G745977
XM_021613779.2 mRNA upstream 163332 74530674 ~ 74534017 (+) True LOC110530584
XM_036986219.1 mRNA upstream 196227 74480507 ~ 74501122 (+) False LOC110530582
XM_021613790.2 mRNA downstream 287 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA downstream 291 74713094 ~ 74717411 (+) True LOC110530590
XM_021614268.1 mRNA downstream 82613 74795416 ~ 74796285 (+) True LOC110530985
XM_021613807.2 mRNA downstream 91898 74804701 ~ 74812569 (+) False LOC110530598
XM_021613808.2 mRNA downstream 109691 74822494 ~ 74843597 (+) False LOC110530599
TU846223 other upstream 976699 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 1102111 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1446853 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1828967 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1832646 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 239882 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 301841 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 310361 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 319127 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 614969 75327772 ~ 75328195 (+) True G746936

Expression Profile