RNA id: TCONS_00035311


Basic Information

Item Value
RNA id TCONS_00035311
length 506
lncRNA type retained_intron
GC content 0.47
exon number 3
gene id XLOC_017890
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6163932 ~ 6196989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaGAAGGTTTTTCTAGAGTTTGTTGTGGTTCTTCAGTTTAGTGACTGTcaaatattgtgtgtgttttcagcctTCCCTACAATGAGTTTTTTGGTGGAGTGAGTGGACTTACTGTTGAACAGTTTCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGACGATGACCTCTGGAACAGgGTTCATTATGCAGGCTTCAATGTTACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTGCAGTTCTTGGGAAGGTACAAGTTGCTGAGGTACTCCAAAGAGCGACAGCATCTGGACGGCTTGAACAATCTGCAGTACTCTCCGGAAATCTCTCTGAGCAACCTGTATAAGAACATCACAGTCAACCTCAATCCTGAGCTCGCCCCCATTGCAGAGTACTGACAGGCTCAGCGTGACCAATCCTTCCCCGCCCCTCGAGTCAGAAAATGTGATGTATCGATGC

Function

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040426-789 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

Ensembl:

ensembl_id ENSDART00000139168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035303 lncRNA downstream 132225 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00035305 lncRNA downstream 132225 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00035304 lncRNA downstream 132225 6033785 ~ 6035070 (-) True XLOC_017888
TCONS_00035302 lncRNA downstream 144186 6012451 ~ 6023109 (-) True XLOC_017887
TCONS_00036793 lncRNA downstream 1097105 5068812 ~ 5070190 (-) True XLOC_017876
TCONS_00036794 lncRNA upstream 40851 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00036447 lncRNA upstream 306515 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036448 lncRNA upstream 966068 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036795 lncRNA upstream 1019888 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036796 lncRNA upstream 1440160 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00035307 mRNA downstream 35471 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035306 mRNA downstream 35471 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035308 mRNA downstream 35609 6116208 ~ 6131686 (-) True XLOC_017889
TCONS_00035299 mRNA downstream 766900 5378841 ~ 5400395 (-) True XLOC_017884
TCONS_00035298 mRNA downstream 798190 5330540 ~ 5369105 (-) True XLOC_017883
TCONS_00035312 mRNA upstream 69860 6241855 ~ 6278817 (-) True XLOC_017892
TCONS_00035313 mRNA upstream 136569 6308564 ~ 6476705 (-) True XLOC_017893
TCONS_00035314 mRNA upstream 344528 6516523 ~ 6532462 (-) True XLOC_017895
TCONS_00035316 mRNA upstream 636779 6808774 ~ 6812688 (-) False XLOC_017897
TCONS_00035318 mRNA upstream 722891 6894886 ~ 6936488 (-) False XLOC_017898
TCONS_00035301 other downstream 171592 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 553299 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035297 other downstream 845966 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035291 other downstream 1259818 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035282 other downstream 1400809 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035315 other upstream 409804 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 637626 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035322 other upstream 898645 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035333 other upstream 1440287 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 1814955 7986950 ~ 7994084 (-) True XLOC_017910

Expression Profile

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