RNA id: XM_021613807.2


Basic Information

Item Value
RNA id XM_021613807.2
length 5743
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC110530598
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74804701 ~ 74813438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGTTTGAGAGAAGAAGACTTGTTGAGGGAAATTGACACATATGACTGTAGTCTTCACACGTTGTTCTCTTTTACACCAAGATGCCACCAACGGAGTTGAACATTTGTGGCGGAAAATTCACCCGCGCATCGCTTCTAATTCGGACAATTTAGTTAACTACTTTTTCAGTGTGCAGGGAGAAAAAATGAAAGCATTCTGTTGGCCCATGTGCAGCTGAAGCATGTCTCGTCGGAAACAGAAACGGCCCCAGCAGCTCATGATCCCGCTCCCTTCAGCCTCTCAGATATTAGAGCATGATGACCAGTTGGCAGTGAAGTTATCCTCCTTTCCTCTGACCACAGATTCCTCTTCttcatcatcttcctcctctcctcagagTTACCAGCCACCCCTGGCTCCACATCCCTACTTTTGGGGGCTTCACACCCGCTCTCTACCCAGTGAGGGCTCCCCCCTCTCCTGCTGCCCCTGCCAGCCCACCTCCTGCCCCATCTCCTTCACAGACCCccagtcctccctctcccctgacttcccccacccctccctcttctcccagacAGGCCTGCACCTCCCCAACACCTCCACATCGCCCTCCAGTCAGACCCACCCTCCCCGCTCTATCATGGCCTCTCCCAAACTGGGCGTGTCAGCCACCACTACcacttcctcatcctcttcctcagccTCCCTCTGCCCCCCGCCCCACCCTGGTAGCCCCAGCCCTGTGCCCGAGGGCCCTCCCAGCCCTGTGACACCCTCCCCCAGCCCGGGTGCTACCTCTGCAGCCCCGCCCCGTGCCCACCTGAGCATTGCGGTGATCCTGGATGAGCTGCGAGTGCTGCAGCAGAGGCAGATCCACCAGATGCAGATGACGGAGGAGATCTGCAGGCAGGTGCTGCGGCTGGGCGGGGCCTCCTGTGGCCTGGAGGCGCCCCAGATCCTCCTGCCTCCTTTTccccagctctgtctggagggcAGTGAGAGGGCCTCCAGTCCTCCCCAGCCTACACCCATCCAGCCTCCCAGCTCTGTAGCTCCTCTCCTGGCCTGCttctcctccctgctccctccccagCCTGCCTCCAAGCCCTCCAAGCCCAGCCACCCCCTGTCCCATGTCCTGCGGCCACACAAGACCCAGATGGAGGGTGCAGGAGGGGCTACAGGGTCTTATCTTTACCCTGGGACCAGTGTCCGCCCTTCCTCCTCGTCTTCTGCCTCCTCAGCCATCTCTACCATGGCCTCGTCCAACTACCCCCTGGCCCTCTCCCTGGCCTTGCCTACCCGTTACCTCCATGAGAAATCCCCCAACACCACCTCAGCCAGCGGCCACGGTGGCCTGTCCTTCCTCACCCCACCCCTGCCCACCACTGCCTCTATGGCACCCCCCTCCTTTCAGGAGCCccacctgtctgtctcctcatcagggtcctcatcctcctccctggGGCGTCTCCAGCATGCCTGTCGGTTCTGtgggaagctgttcagcagtgaCTCATCCCTGCAAATCCACCTGCGCTCCCACACGGGCGAGAGACCCTACCAGTGCCCTGTCTGCCTCAGCCGCTTCACCACCCGTGGCAACCTCAAGGTGCATTTCCTCCGCCACCGCGAGCAGAACCCAGagctctcgctctcccttctccccccttcCCTGTTTGGGCCGGGCATGGGACCAGCGGGGGGGTCTGAGCCCCAGGGTCAGCCCATGAGCAGCATTGGACTGAGTATCAGTGCAGCACAGGCTCAGAGACGTCGTAAACGGCGGGCTGAGGATGACCCGTATGGAGACGGTATGGAGGTGGGAGGTGCCGGAGGGGGCTTCTCTCTGGGGGCATCCACCAGtgctccccccacctctctcccccttccccccagTGTGGACCTGGCCCTCATCTCCACCGCCCACTCCCTCCTGCGGCTCAACCAAGCTGCTGCTGCAGCCGCTGCTGCATCCATAACCTCAGCTGCTTCCTCActcacatcctcctcttcctcttctgcgtcctcctccctcctctctgtcccatCCTCGTCCACCTCTGCCATCGCTGGGTTCTTCAAGGGGGCAAAGCAGCAACGCTTTGATGAGAACACGCCCCCTCACCCTCCCATGATGTCGCACTCTGCTTACTCCCAGTTGGCCCACCTCCCTAAACTCCTCTTCCCCTCTGGCTCCCCCCACCAACACCCTGCCCTGGGCCTGCTCCGCCCTCCACCCCCTGCCCAAGgctcctcccacctctcctccacccactctCAGCTCTCCTCACCCTTCTCCCACTACCCCAAAGCCCacgcctccacctcctccccctccgtCTCTACCCCCACCTCAGACACCTCCAAGCTGCAGCGGCTGGTGGAGAAGCTGGAGAAGgagcctcccacctcctctccctgggCCTCCTCCTCAGGGGAGATCTCCCACAGCAGCATGGCCTCTACTGGGTTGTTCAGTAGCGGCCTCATGGGCGCCAGCACCTCCAGCACTTATGTGATGGCAACCCCACCGTCCTCCACCCATGCCCCCACCTCTGTCTCCAACTTCACCAGGGAGATGGTGGCCGCTCTGGGCATGAGTGCAAATGGGGGCAGCGCCTTGGCAGGAGCCATGCTCCCAGGCATTGGCATCATGAGCACTGGCTCCCTGGCCTCCAACCAGTGTGGGGTGTGTCTGCGTGTGCTGAGCTGCCCCAGGGCACTGCGTCTGCACCAGGCCACCCACCTGGGCGAGCGCCCATTCCCCTGTAAACTGTGTGGACGCTCCTTCTCCACCAAGGGCAGCCTGCGGTCCCACCTGGCAACACACCGTGCCCGCCCGCCGAACTCTCGTGCCCAGAACTCTTGCCCGCTGTGCCAGCGCAAGTTCACAAATGCCCTGGTGCTGCAGCACCACATTCGCATGCACCTGGGAGGgcagctgccaccggagggcggTGCAGAGTCTCTGTCAGAGGCCTCAGCAGAGTGTGACACTATCTCTGAGCTCCAGACCCATTCCCTGGCACTGTCTCAGTCCCAGCCACAGTCCAATGACACCCCCAAGGTCTCCACTGAGAGCTCCACTGCAGCCTCAGGCAGCCAGTCAAAGAGCTCAGCAGCATCCACACACTTTCAAACCCTAGTGGGAGGCTCTGCCCCAGTATCGGTCAGTGTGACATCACCAAAGTGTGTCTGGGAGCCTAACAGATCTCACTCCTCCAGCCCTGACCTGATCCCTCCCTCTGACCTCACCCCTGACTCCTTCCTAAACTCCACCTCACACACCCCTCCGCCCGGCAGCGCAGACGCCCCAGTCCTGTTTGTCAGTGTGCcttccccaccccctcctctagGAGATACAGGCTCCCCAGTCAACGATGATAACCATGCTGAACACCTTGATTCAACCATTAGTACCATTGGCCCTGCTCCCACTTCCTCCAGTGTTACCAAAACCACCCCCTTGTCCAGTCTAATGATGTCAGACTGCCTTTTGGGTCAGCATGCCCTTCCTCTCAATGTCTTCCTCCCCGGCCCTAGATCAAACCTGGAGGATCTACTGAGCACACCAACCCTCTGTGCCCCGGTAGCACACCCAAGCCCAGCCCCCTCCTTTACCCCTGTACTTAGCCCAGAGCACCCCAAACCCCACCCAGCACCCAAACCAGACTTAGAGGACCCCCCTAAACTCCAAACCCCCAAGCCCACAGAGGAATACAGGGTTGAAACCCCCCCACCTGCAGCACCAAAGCATGACCAAGCTCTTGTATCTGATACGGACCCGAGAATGGCACCACCATCAGAGAACACAGACACAAGCGATGCTGAGGCTAGGGAAGTTCCTCAGAAAGATGTACCCTACACCAGGATGAGTCAGGGGGCGTACCTCGGCTCCCATGGGAAGGAGGATGGGATGAGTGGTGTCAGTGACCAACTGGAAAGCACTTTTCCCATCAGTTTGGCTaccactctcccccctcccctgtcTCGCCCTGAGAAGAAGACCTACAGCTGTGTCGAGTGTGGGAAAGAGTATGCCAGCCGCAGTGGACTGAAGGGACACATGAAGCATCATGGAGGGGTTGTCAAGGCACCACGTCCCCCTGTACGGAGCGGTCGCTCGGCCTCTGAGCGACTTCCTGCTAACACACCGACAACGTCCTCCAACCCCCCGGCCACCAGAAGCAATGTGGGCTTCTGGAACCAGTACCAAGCCTTCCTCAACACCAGCAACGACTCGGCAGACGACCCGGCACAAGGCCCGGCCAGTGGTAGCcaaggagaggatggggagatgcCCCGATTGGCTAAATCTCCCGTTAGATCCCAGCTGTCGAAAGAACCAACCACTGGAAGGGGTTCAGAAGATGGGTCTGACGAAGGGTCTACTCTAGAGTCAATGTAATTGGTGCTATCAATGGACATTCACTGTACCTTTGAGTCAAACCGTAGGGACTTTTGTATTGTATTGCTTCCAAATTCAGTTGAGTAGTCTGTCGGGTTTGTTGTCTGTGAGTAAGTTGCTTAGTTAATTTGTGATAACTGTAAGTTGGCCATCCTGGCCTTTTCTTTTAAAAAAGGAGAAAGTTGAAGGATGCAAAAAACATGACATAACTACAGGATTGGAAGATTGAGGAGGTCAGAAGTCACTGTTAAGACAATAAGAGTTGGAGCTGGGCTCTAAAATGAGAGCTCTGTTAGGCAAAGAGCTCTACTCTAGATTTAGGGCTAATTTTCCTGAACAGTCTGACTCACTGTTTATGTGATAGATATCAACTCAGATAAAGAGATGTATTGGAAAAGGTAAGGTAGAGAGGATGTGATATTGTTCTCACATAAACAATTCCTTCATTCAAACATAAAAGGGAAAAGGAGGTGAAACAGAATGGTACGGGTCCCTAAACTAAACTTGACATGGTAGCTTCAGCCCTGGCAGTCTATGGAGATGCAGTCTCTCATCCTACTACCGTATAAAACCTCATCTTTCATGTCATCTGGGTTTACTTTTGAACTTGTGAATACTCCAGACTCTTCCTCCAGCTGATTTACAGAGAAGCACAGAGGAGTGGGTGTTGTGGTGTGCCAGGTGGAGAAAGAAATGGACAGACAGTTTCCTGTGTGACCCATTTTCCTTTGGATTTTTTGAATAAGCTGATTGTCGTTTGGTCTCACAGTGATGTCCGTTCTCTGTAACTCGTTGTCTTTGGTTCATGTTGTATCtttataacaaaacaaaaaaaatcagagGTCCATGTCTGATATTGTTGTGAGTTGTACTTTCAGTGTATTCCTGTGAAATAAGAGGgataaaaaaagacaaaaaagctcttattttttgttgttgttgttgactgtggCTGTTTTATTTGTTTTGGATCTCTATTGTGCCTGTTCTACATTCTCCTGTAGAGCTGTTTTATTTGTTTTGGATCTCTATCGTGCCTGTTCTACATTCTCCTGTAGAGCTGTTTTgatatttgtttatttgtcacacactGCTGTTAGTGACACCAAAACAATGGCACATGCACAAACATGCCAGATGCACACAGCTGTTTTGTGCATATCGTAAGTGTGCATTTGGCTATTTTTTTGTGcaagtgggtgtgtgtttgtgtgtgtgagcgcgctAGATATGTGTACGTATGTGcctatgtgcgtgtgtgttggcaCAGCAGTGTGtagccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaaaggcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846787 lncRNA upstream 11885 74792558 ~ 74792816 (+) True G745977
TU846786 lncRNA upstream 12234 74792115 ~ 74792467 (+) True G745976
TU846770 lncRNA upstream 22028 74780777 ~ 74782673 (+) True G745967
TU846742 lncRNA upstream 50727 74753288 ~ 74753974 (+) True G745950
TU846716 lncRNA upstream 76055 74727769 ~ 74728646 (+) True G745932
TU846834 lncRNA downstream 28438 74841007 ~ 74841341 (+) True G746008
TU846803 lncRNA downstream 29382 74841951 ~ 74843495 (+) True LOC110530599
TU846838 lncRNA downstream 40289 74852858 ~ 74853979 (+) True G746012
TU846840 lncRNA downstream 42140 74854709 ~ 74854939 (+) True G746014
TU846867 lncRNA downstream 126144 74938713 ~ 74938952 (+) True G746041
XM_021614268.1 mRNA upstream 8416 74795416 ~ 74796285 (+) True LOC110530985
XM_021613790.2 mRNA upstream 87290 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA upstream 87290 74713094 ~ 74717411 (+) True LOC110530590
XM_036986228.1 mRNA upstream 91898 74697349 ~ 74712803 (+) True LOC110530591
XM_021613779.2 mRNA upstream 270684 74530674 ~ 74534017 (+) True LOC110530584
XM_021613808.2 mRNA downstream 9925 74822494 ~ 74843597 (+) False LOC110530599
XM_021613816.2 mRNA downstream 76636 74889205 ~ 74892297 (+) False c8h14orf119
XM_021613814.2 mRNA downstream 77579 74890148 ~ 74892644 (+) True c8h14orf119
XM_021613819.2 mRNA downstream 145621 74958190 ~ 74964449 (+) False homeza
XM_021613817.2 mRNA downstream 146670 74959239 ~ 74964449 (+) False homeza
TU846223 other upstream 1084051 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 1209463 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1554205 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1936319 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1939998 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 140116 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 202075 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 210595 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 219361 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 515203 75327772 ~ 75328195 (+) True G746936

Expression Profile